Protein Concepts Dictionary

Tableau information

Concept source:  d2qqma2  amino acid (a.a.) range (SER302)(LYS373)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: HEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER302)  (LEU308) H1
	  (GLY314)  (GLY318) E2
	  (TRP325)  (GLY331) E3
	  (THR337)  (GLY343) E4
	  (LYS350)  (LYS356) E5
	  (LYS359)  (SER364) E6
	  (GLU367)  (LYS373) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                               
E2     -139.2°   E2                                        
E3      -78.6°  120.4°   E3                                 
E4      111.9°  -81.3°  134.5°   E4                          
E5      -72.2°   80.6°  -70.8° -154.4°   E5                   
E6     -101.5°   95.0°  -25.8°  132.6°  -67.2°   E6            
E7       37.0° -110.5°  115.4°  -87.8°  -81.7°  135.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1d7pm_ :  (SER2204) (GLN2276)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
 d2orxa2 :   (MET458)  (ASP531)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |B1 domain of neuropilin-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1czsa_ :    (GLU32)  (LEU104)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor V |Human (Homo sapiens) [TaxId: 9606]
 d2orxa1 :   (GLY298)  (LYS373)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |B1 domain of neuropilin-1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1iqdc_ :  (SER2204) (GLN2276)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
 d2qqna_ :   (SER302)  (LYS373)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
 d1kexa_ :    (SER30)   (THR99)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |B1 domain of neuropilin-1 |Human (Homo sapiens) [TaxId: 9606]
 d2qqma2 :   (SER302)  (LYS373)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
 d1czva_ :    (GLU32)  (LEU104)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor V |Human (Homo sapiens) [TaxId: 9606]
 d2qqma1 :   (MET458)  (ASP531)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]
 d2qqja1 :   (THR305)  (HIS377)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2pqsa_ :    (PHE34)  (ASP106)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
 d2qqia2 :   (SER302)  (LYS373)   [view usage] : b.18.1.2 |Galactose-binding domain-like |Galactose-binding domain-like |Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) |C2 domain of factor VIII |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.18