Protein Concepts Dictionary

Tableau information

Concept source:  d1xmea_  amino acid (a.a.) range (GLU217)(GLY328)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU217)  (LEU222) E1
	  (LEU222)  (ILE250) H2
	  (LEU251)  (GLY256) H3
	  (GLY256)  (SER261) E4
	  (SER261)  (LEU274) H5
	  (LEU275)  (PHE285) H6
	  (PRO292)  (GLY328) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2      -66.2°   H2                                        
H3      -62.2°   27.1°   H3                                 
E4       81.7° -129.0°  142.4°   E4                          
H5      123.8° -169.6°  151.0°   59.2°   H5                   
H6      -94.5°  127.1°  100.0°   92.4°  -53.1°   H6            
H7      -73.7°   11.8°  -22.0°  140.7° -159.0° -119.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3s8ga_ :   (GLU217)  (GLY328)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d4g7sa_ :   (GLU217)  (GLY328)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d1xmea_ :   (GLU217)  (GLY328)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d3s8fa_ :   (GLU217)  (GLY328)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d3qjqa_ :   (GLU217)  (ALA306)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  f.24