Protein Concepts Dictionary

Tableau information

Concept source:  d1m08a_  amino acid (a.a.) range (GLY451)(GLY524)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY451)  (LYS456) E1
	  (LEU465)  (LYS470) H2
	  (PRO477)  (LEU484) H3
	  (ASP486)  (LYS490) E4
	  (PHE492)  (ASP506) H5
	  (ASP506)  (GLN512) H6
	  (SER514)  (GLY524) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2      104.0°   H2                                        
H3     -140.9°  -96.9°   H3                                 
E4      143.6°  -61.7°   75.5°   E4                          
H5      -44.2° -141.4°  121.7°  126.7°   H5                   
H6       90.5°  -61.6° -128.6°  -53.1°  -92.5°   H6            
H7     -130.5°   82.1°  -22.4°   83.0° -133.3°  131.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1mz8b_ :   (PRO450)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E7 |Escherichia coli [TaxId: 562]
 d2gykb_ :     (PRO8)   (GLY82)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
 d1v15d_ :     (PRO8)   (GLY82)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
 d7ceib_ :   (GLY451)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E7 |Escherichia coli [TaxId: 562]
 d2gzfb_ :     (PRO8)   (GLY82)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
 d1v13b_ :     (PRO8)   (GLY82)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
 d3fbdd_ :   (PRO450)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |automated matches |Escherichia coli [TaxId: 562]
 d3zfka_ :   (PRO450)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |automated matches |Escherichia coli [TaxId: 469008]
 d3fbda_ :   (PRO450)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |automated matches |Escherichia coli [TaxId: 562]
 d1pt3a_ :   (GLY451)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E7 |Escherichia coli [TaxId: 562]
 d2vlnb_ :     (PRO8)   (GLY82)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E9 |Escherichia coli [TaxId: 562]
 d1mz8d_ :   (PRO450)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E7 |Escherichia coli [TaxId: 562]
 d1m08a_ :   (GLY451)  (GLY524)   [view usage] : d.4.1.1 |His-Me finger endonucleases |His-Me finger endonucleases |HNH-motif |DNase domain of colicin E7 |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.4