Protein Concepts Dictionary

Tableau information

Concept source:  d1yqqa_  amino acid (a.a.) range (VAL187)(ILE276)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL187)  (PRO192) E1
	  (THR198)  (GLY209) H2
	  (ASP211)  (MET215) E3
	  (VAL218)  (ASP228) H4
	  (VAL231)  (ILE237) E5
	  (HIS251)  (LYS262) H6
	  (LYS262)  (ILE276) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2      145.5°   H2                                        
E3      -25.5°  129.9°   E3                                 
H4     -111.8°   36.3°   93.6°   H4                          
E5       79.5° -133.7°   95.9° -168.1°   E5                   
H6     -151.9°  -42.1° -127.5°  -61.0°  107.3°   H6            
H7     -116.2°   33.7°  -96.4°   -6.3°  162.3°   54.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1v4nc_ :   (GLY161)  (LEU251)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |5'-deoxy-5'-methylthioadenosine phosphorylase |Sulfolobus tokodaii [TaxId: 111955]
 d1wtaa_ :   (THR166)  (ALA256)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Aeropyrum pernix [TaxId: 272557]
 d3ozca_ :   (GLY167)  (THR261)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |5'-deoxy-5'-methylthioadenosine phosphorylase |Human (Homo sapiens) [TaxId: 9606]
 d2h8ga_ :   (ARG174)  (ASN260)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d2qtta_ :   (ARG174)  (PHE258)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d2qsua_ :   (ARG174)  (ASN260)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 d1v4na_ :   (GLY161)  (LEU251)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |5'-deoxy-5'-methylthioadenosine phosphorylase |Sulfolobus tokodaii [TaxId: 111955]
 d3odga_ :   (VAL195)  (SER270)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Yersinia pseudotuberculosis [TaxId: 633]
 d1i80a_ :   (GLN174)  (PHE268)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |Purine nucleoside phosphorylase, PNP |Mycobacterium tuberculosis [TaxId: 1773]
 d1yqqa_ :   (VAL187)  (ILE276)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d1v4nb_ :   (GLY161)  (LEU251)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |5'-deoxy-5'-methylthioadenosine phosphorylase |Sulfolobus tokodaii [TaxId: 111955]
 d3t94a_ :   (GLY160)  (LYS249)   [view usage] : c.56.2.1 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |Purine and uridine phosphorylases |automated matches |Sulfolobus solfataricus [TaxId: 2287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.56