Protein Concepts Dictionary

Tableau information

Concept source:  d2onma_  amino acid (a.a.) range (SER273)(CYS369)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER273)  (SER279) E1
	  (ASP282)  (PHE296) H2
	  (SER306)  (GLN311) E3
	  (GLN311)  (ARG329) H4
	  (GLU340)  (PRO343) E5
	  (GLU347)  (GLY364) H6
	  (GLY364)  (CYS369) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2     -167.7°   H2                                        
E3      -21.7° -158.2°   E3                                 
H4      122.3°  -54.1°  143.8°   H4                          
E5     -134.0°   39.2° -119.3°  -86.3°   E5                   
H6      -45.9°  127.8°  -32.2° -142.0°  -88.8°   H6            
E7       82.5°  -98.0°  103.1°  -45.9° -132.0° -124.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1wnba_ :   (ARG242)  (THR348)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Putative betaine aldehyde dehydrogenase YdcW |Escherichia coli [TaxId: 562]
 d4u3wa_ :   (SER261)  (THR364)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d4nmjf_ :   (SER257)  (LEU354)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d4nmjg_ :   (SER257)  (ILE355)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d3ek1b_ :   (ASN260)  (THR357)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d4nmkc_ :   (SER257)  (ILE355)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pyrobaculum sp. [TaxId: 1104324]
 d4i8pa_ :   (SER267)  (THR363)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Maize (Zea mays) [TaxId: 4577]
 d3ek1g_ :   (ASN260)  (THR357)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.82