Tableau information
Concept source: d1uf3b_ amino acid (a.a.) range (TYR7)(HIS98)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: EHEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR7) (ASN13) E1
(ASP17) (GLY32) H2
(ASP34) (GLY40) E3
(SER49) (HIS63) H4
(PRO65) (PRO70) E5
(TRP78) (PRO92) H6
(MSE94) (HIS98) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 170.2° H2
E3 -13.0° 158.9° E3
H4 164.0° -13.5° 161.7° H4
E5 -18.1° 153.0° -6.1° 155.9° E5
H6 156.3° -32.8° 167.8° -30.0° 173.9° H6
E7 -53.5° 118.9° -40.6° 127.4° -35.8° -148.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3zpca1 : (ILE42) (GLY129) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d2akab1 : (LEU132) (ARG237) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Dynamin G domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1nneb2 : (ASP1620) (ALA1719) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |DNA repair protein MutS, the C-terminal domain |Thermus aquaticus [TaxId: 271]
d1uf3a_ : (ARG6) (GLU99) [view usage] : d.159.1.6 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TT1561-like |Hypothetical protein TT1561 |Thermus thermophilus [TaxId: 274]
d4hd0a_ : (MET1) (GLY108) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d1e0jb_ : (THR390) (ASN505) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Gene 4 protein (g4p, DNA primase), helicase domain |Bacteriophage T7 [TaxId: 10760]
d1jqlb_ : (MET1) (LEU83) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |delta subunit of DNA polymerase III, N-domain |Escherichia coli [TaxId: 562]
d3mbia1 : (ASN49) (ASN142) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Thermoplasma volcanium [TaxId: 50339]
d1dika2 : (LYS406) (GLY470) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d1r61a_ : (GLY73) (GLY168) [view usage] : c.8.8.1 |The "swivelling" beta/beta/alpha domain |Putative cyclase |Putative cyclase |Unnamed protein |Bacillus stearothermophilus [TaxId: 1422]
d1wlsa_ : (LYS201) (ALA287) [view usage] : c.88.1.0 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d2hxva2 : (ALA38) (GLY126) [view usage] : c.97.1.2 |Cytidine deaminase-like |Cytidine deaminase-like |Deoxycytidylate deaminase-like |Riboflavin biosynthesis protein RibD |Thermotoga maritima [TaxId: 2336]
d1ii7b_ : (LYS2) (GLY108) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d4coga_ : (PRO77) (GLY173) [view usage] : c.8.8.0 |The "swivelling" beta/beta/alpha domain |Putative cyclase |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d4co9c_ : (PRO79) (GLU173) [view usage] : c.8.8.0 |The "swivelling" beta/beta/alpha domain |Putative cyclase |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d4co9a_ : (PRO79) (GLU173) [view usage] : c.8.8.0 |The "swivelling" beta/beta/alpha domain |Putative cyclase |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d1uf3b_ : (TYR7) (HIS98) [view usage] : d.159.1.6 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TT1561-like |Hypothetical protein TT1561 |Thermus thermophilus [TaxId: 274]
d1qzqa1 : (PHE166) (GLN252) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1vp8a_ : (LYS3) (GLN92) [view usage] : c.49.1.2 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |MTH1675-like |Hypothetical protein AF0103 |Archaeoglobus fulgidus [TaxId: 2234]
d2xwtc_ : (GLN55) (PHE134) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t34a_ : (THR45) (GLY127) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Hormone binding domain of the atrial natriuretic peptide receptor |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ii7a_ : (MET1) (GLY108) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d3g04c_ : (GLN55) (ILE133) [view usage] : c.10.2.0 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t1ra2 : (GLN2) (GLY80) [view usage] : c.2.1.3 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain |1-deoxy-D-xylulose-5-phosphate reductoisomerase |Escherichia coli [TaxId: 562]
d3dsda_ : (MET1) (GLY108) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d1z2bb1 : (ASN91) (ASP205) [view usage] : c.32.1.1 |Tubulin nucleotide-binding domain-like |Tubulin nucleotide-binding domain-like |Tubulin, GTPase domain |Tubulin beta-subunit |Cow (Bos taurus) [TaxId: 9913]
d2p50a2 : (ASN94) (GLY194) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Escherichia coli [TaxId: 562]
d3zpcb1 : (ILE42) (GLY129) [view usage] : c.97.1.0 |Cytidine deaminase-like |Cytidine deaminase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1o12a2 : (THR77) (ALA174) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Thermotoga maritima [TaxId: 2336]
d2x0sa2 : (GLN433) (GLY499) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1s8ea_ : (LYS2) (GLY108) [view usage] : d.159.1.4 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |DNA double-strand break repair nuclease |Mre11 |Pyrococcus furiosus [TaxId: 2261]
d2d6fb2 : (ARG303) (ASP389) [view usage] : c.88.1.1 |Glutaminase/Asparaginase |Glutaminase/Asparaginase |Glutaminase/Asparaginase |automated matches |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1ulta_ : (LYS246) (GLY325) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Long chain fatty acid-CoA ligase TT0168 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.2, d.159, c.93, c.37, c.32, e.23, c.97, c.8, c.61, c.49, c.88, d.136