Protein Concepts Dictionary

Tableau information

Concept source:  d4g4wa_  amino acid (a.a.) range (ARG79)(TYR183)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG79)   (ASP84) E1
	   (SER91)  (ASN108) H2
	  (ASN110)  (ASP120) E3
	  (THR124)  (GLY147) H4
	  (LEU153)  (GLY159) E5
	  (ASP169)  (ARG177) H6
	  (ARG178)  (TYR183) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2     -150.5°   H2                                        
E3      -28.2° -155.2°   E3                                 
H4      124.6°  -59.7°  144.7°   H4                          
E5      -46.8°  138.2°  -20.0°  160.1°   E5                   
H6      126.9°  -28.6° -149.9°  -50.1° -149.3°   H6            
E7      164.2°   15.5°  162.9°  -51.1°  142.9°  -37.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4g4va_ :    (ARG79)  (GLU184)   [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 980514]
 d1oapa_ :    (ASN48)  (TYR152)   [view usage] : d.79.7.1 |Bacillus chorismate mutase-like |OmpA-like |OmpA-like |Peptidoglycan-associated lipoprotein, PAL, periplasmic domain |Escherichia coli [TaxId: 562]
 d4b5cc_ :    (ARG64)  (GLN169)   [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
 d3td3d_ :   (HIS219)  (ARG339)   [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d2w8bc_ :    (ASN69)  (TYR173)   [view usage] : d.79.7.1 |Bacillus chorismate mutase-like |OmpA-like |OmpA-like |automated matches |Escherichia coli [TaxId: 562]
 d4r40b_ :    (ASN64)  (TYR168)   [view usage] : d.79.7.1 |Bacillus chorismate mutase-like |OmpA-like |OmpA-like |automated matches |Yersinia pestis [TaxId: 214092]
 d4g4wa_ :    (ARG79)  (TYR183)   [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 980514]
 d4g4zc_ :   (GLU221)  (ARG339)   [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
 d4b5ca_ :    (ARG64)  (TYR168)   [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
 d2aizp1 :    (ASN30)  (TYR134)   [view usage] : d.79.7.1 |Bacillus chorismate mutase-like |OmpA-like |OmpA-like |Peptidoglycan-associated lipoprotein, PAL, periplasmic domain |Haemophilus influenzae [TaxId: 727]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.79