Protein Concepts Dictionary

Tableau information

Concept source:  d6gswa2  amino acid (a.a.) range (MET2)(HIS83)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET2)    (TYR6) E1
	   (VAL13)   (ASP24) H2
	   (TYR27)   (ALA33) E3
	   (ARG42)   (LEU52) H4
	   (PRO60)   (GLY65) E5
	   (SER66)   (GLN71) E6
	   (GLN71)   (HIS83) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2     -156.7°   H2                                        
E3      -19.1° -156.3°   E3                                 
H4     -137.2°   65.4° -132.4°   H4                          
E5      162.2°   35.4°  143.2°   42.1°   E5                   
E6      -31.1°  137.3°  -50.2° -127.8°  165.4°   E6            
H7     -154.2°   14.7° -166.1°   61.4°   42.5°  126.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3isoa1 :     (PRO3)   (ASN80)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Clonorchis sinensis [TaxId: 79923]
 d4gtua2 :     (SER1)   (ASN84)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Human (Homo sapiens) [TaxId: 9606]
 d6gswa2 :     (MET2)   (HIS83)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4l5oa1 :     (PRO3)   (ASN80)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Clonorchis sinensis [TaxId: 79923]
 d6gsua2 :     (MET2)   (HIS83)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2f3ma2 :     (MET2)   (HIS83)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Human (Homo sapiens) [TaxId: 9606]
 d1fhea2 :     (ALA2)   (HIS78)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class alpha GST |Fasciola hepatica [TaxId: 6192]
 d6gsxa2 :     (MET2)   (HIS83)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1gtua2 :     (MET2)   (ASN84)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Human (Homo sapiens) [TaxId: 9606]
 d1b4pa2 :     (MET2)   (HIS83)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1bg5a2 :     (SER2)   (ASN80)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class alpha GST |Schistosoma japonicum [TaxId: 6182]
 d1yy7b1 :    (VAL10)   (PRO84)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Yersinia pestis [TaxId: 632]
 d4edzb1 :     (ASN3)   (LYS73)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1b8xa2 :     (SER1)   (LYS77)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class beta GST |Escherichia coli [TaxId: 562]
 d6gsva2 :     (MET2)   (HIS83)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2wrta1 :     (PRO2)   (GLY80)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Fasciola hepatica [TaxId: 6192]
 d1c72a2 :     (VAL1)   (ASN84)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Chicken (Gallus gallus) [TaxId: 9031]
 d1gnea2 :     (PRO2)   (ASN79)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class alpha GST |Schistosoma japonicum [TaxId: 6182]
 d2dc5a1 :    (MSE10)   (HIS91)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2fhea2 :     (ALA2)   (GLY79)   [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class alpha GST |Fasciola hepatica [TaxId: 6192]
 d2ws2a1 :     (VAL2)   (PHE75)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Haemonchus contortus [TaxId: 6289]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.47