Protein Concepts Dictionary

Tableau information

Concept source:  d1jxla1  amino acid (a.a.) range (ILE245)(LYS339)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHEEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ILE245)  (MET251) E1
	  (ASN257)  (LEU276) H2
	  (LYS282)  (THR290) E3
	  (LEU293)  (PRO303) E4
	  (SER307)  (SER313) H5
	  (GLU314)  (GLU325) H6
	  (ILE333)  (LYS339) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2      147.8°   H2                                        
E3      -27.1°  132.7°   E3                                 
E4      139.8°  -61.4°  165.5°   E4                          
H5      -42.1°  150.8°  -36.1°  134.2°   H5                   
H6      -54.5°  132.6°  -38.1°  138.5°  -18.2°   H6            
E7     -174.1°  -38.1°  153.6°  -38.1°  133.4°  122.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2uvra1 :   (GLY246)  (SER338)   [view usage] : d.240.1.0 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
 d1jx4a1 :   (ILE245)  (LYS339)   [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DinB homolog (DBH) |Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
 d1gph12 :     (CYS1)   (THR75)   [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glutamine PRPP amidotransferase, N-terminal domain |Bacillus subtilis [TaxId: 1423]
 d1jxla1 :   (ILE245)  (LYS339)   [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DinB homolog (DBH) |Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
 d1n48a1 :   (ILE245)  (LYS339)   [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DinB homolog (DBH) |Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]
 d2uvua1 :   (GLY246)  (SER338)   [view usage] : d.240.1.0 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 273057]
 d1ecba2 :     (CYS1)   (ARG73)   [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Glutamine PRPP amidotransferase, N-terminal domain |Escherichia coli [TaxId: 562]
 d2imwp1 :   (ILE245)  (LYS339)   [view usage] : d.240.1.1 |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |Lesion bypass DNA polymerase (Y-family), little finger domain |DinB homolog (DBH) |Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.153,   d.240