Protein Concepts Dictionary

Tableau information

Concept source:  d1cdza_  amino acid (a.a.) range (GLY8)(GLN82)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY8)   (TYR14) E1
	   (PRO18)   (ASN33) H2
	   (ASN33)   (TYR39) E3
	   (GLN45)   (ALA50) E4
	   (ASP54)   (ASN64) H5
	   (SER66)   (VAL70) E6
	   (PRO72)   (GLN82) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2     -173.7°   H2                                        
E3      -42.3° -131.9°   E3                                 
E4      -35.5°  150.5°  -77.6°   E4                          
H5      151.6°  -22.2°  110.1° -171.6°   H5                   
E6      -56.1°  130.1°  -97.2°  -21.3°  152.3°   E6            
H7     -136.5°   49.8° -167.9° -101.4°   71.9°   80.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3pc8a_ :   (LYS544)  (LYS616)   [view usage] : c.15.1.1 |BRCT domain |BRCT domain |DNA-repair protein XRCC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3qvgb_ :   (LYS544)  (GLU615)   [view usage] : c.15.1.1 |BRCT domain |BRCT domain |DNA-repair protein XRCC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3pc6b_ :   (LYS544)  (LYS616)   [view usage] : c.15.1.1 |BRCT domain |BRCT domain |DNA-repair protein XRCC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1cdza_ :     (GLY8)   (GLN82)   [view usage] : c.15.1.1 |BRCT domain |BRCT domain |DNA-repair protein XRCC1 |DNA-repair protein XRCC1 |Human (Homo sapiens) [TaxId: 9606]
 d1y98a2 :  (LEU1764) (TYR1845)   [view usage] : c.15.1.3 |BRCT domain |BRCT domain |BRCT domain |Breast cancer associated protein, BRCA1 |Human (Homo sapiens) [TaxId: 9606]
 d3pc8b_ :   (LYS544)  (LYS616)   [view usage] : c.15.1.1 |BRCT domain |BRCT domain |DNA-repair protein XRCC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.15