Tableau information
Concept source: d2cpha1 amino acid (a.a.) range (SER462)(TRP539)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: EHEEHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER462) (ASN468) E1
(ASN474) (GLY486) H2
(LYS489) (PRO494) E3
(GLY507) (ILE512) E4
(LYS514) (HIS526) H5
(HIS526) (LEU530) E6
(ARG533) (TRP539) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 136.6° H2
E3 -29.4° 156.0° E3
E4 158.2° -31.8° 170.6° E4
H5 22.9° 114.8° -46.2° 143.2° H5
E6 -50.5° 145.6° -52.0° 124.9° 71.7° E6
E7 152.6° -60.5° 125.0° -48.8° -147.5° 132.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4lirb_ : (SER174) (PRO242) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1l3ka1 : (LYS15) (ARG88) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nuclear ribonucleoprotein A1 (RNP A1, UP1) |Human (Homo sapiens) [TaxId: 9606]
d2dnha_ : (ARG134) (PHE211) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pgza1 : (ARG14) (ARG88) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nuclear ribonucleoprotein A1 (RNP A1, UP1) |Human (Homo sapiens) [TaxId: 9606]
d1x5pa1 : (ASN16) (ILE83) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Negative elongation factor E, NELF-E |Human (Homo sapiens) [TaxId: 9606]
d1wwhd_ : (THR173) (PRO241) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nucleoporin 35 |Mouse (Mus musculus) [TaxId: 10090]
d1wf1a_ : (SER28) (ALA97) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |RNA-binding protein Raly (Autoantigen p542) |Human (Homo sapiens) [TaxId: 9606]
d2mika_ : (ALA405) (LYS481) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2do4a_ : (HIS801) (ILE875) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wwhb_ : (THR173) (PRO241) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nucleoporin 35 |Mouse (Mus musculus) [TaxId: 10090]
d1s79a_ : (SER112) (PHE184) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Lupus LA protein |Human (Homo sapiens) [TaxId: 9606]
d1cvja1 : (ALA11) (TRP86) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Poly(A)-binding protein |Human (Homo sapiens) [TaxId: 9606]
d2x9ry_ : (ALA116) (PRO212) [view usage] : e.38.1.0 |Release factor |Release factor |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1whxa_ : (THR222) (TRP291) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Probable RNA-binding protein 19, Rbm19 |Mouse (Mus musculus) [TaxId: 10090]
d1d8za_ : (THR4) (VAL77) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Hu antigen C (Huc) |Mouse (Mus musculus) [TaxId: 10090]
d4lira_ : (SER174) (PRO242) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cq2a1 : (GLN43) (PHE119) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Alkylation repair AlkB homolog 8, ALKBH8 |Human (Homo sapiens) [TaxId: 9606]
d2l08a_ : (HIS10) (LYS97) [view usage] : d.58.7.4 |Ferredoxin-like |RNA-binding domain, RBD |Smg-4/UPF3 |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1up1a1 : (LYS15) (ARG88) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nuclear ribonucleoprotein A1 (RNP A1, UP1) |Human (Homo sapiens) [TaxId: 9606]
d2jx2a_ : (PRO36) (ILE107) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Negative elongation factor E, NELF-E |Human (Homo sapiens) [TaxId: 9606]
d1fnxh1 : (THR39) (VAL112) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Hu antigen C (Huc) |Mouse (Mus musculus) [TaxId: 10090]
d2bz2a1 : (ASN40) (ILE107) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Negative elongation factor E, NELF-E |Human (Homo sapiens) [TaxId: 9606]
d2cpha1 : (SER462) (TRP539) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Probable RNA-binding protein 19, Rbm19 |Mouse (Mus musculus) [TaxId: 10090]
d3j39j_ : (ASP19) (ARG141) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1x4ha1 : (LYS16) (LEU97) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |RNA-binding protein 28 |Mouse (Mus musculus) [TaxId: 10090]
d2rraa_ : (CYS118) (PHE193) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x4ca1 : (ASN16) (VAL89) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicing factor, arginine/serine-rich 1, SFRS1 |Mouse (Mus musculus) [TaxId: 10090]
d2cqha1 : (MET2) (TYR73) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |IGF-II mRNA-binding protein 2 isoform A |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, e.38