Protein Concepts Dictionary

Tableau information

Concept source:  d2pc6a1  amino acid (a.a.) range (TYR81)(THR149)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EHEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR81)   (GLY95) E1
	   (ASP97)  (ARG109) H2
	  (ARG109)  (ILE113) E3
	  (ILE113)  (ASN117) E4
	  (GLU118)  (LEU124) E5
	  (THR127)  (VAL138) H6
	  (LEU144)  (THR149) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
H2     -167.6°   H2                                        
E3      -60.7°  122.0°   E3                                 
E4       11.7° -168.4°  -68.8°   E4                          
E5      171.5°    9.6°  127.1° -163.5°   E5                   
H6       16.1°  166.8°  -71.2°    4.5°  160.0°   H6            
E7      164.3°  -14.7°  107.5°  175.9°  -20.6° -177.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1z2la2 :   (GLY214)  (PRO329)   [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Allantoate amidohydrolase AllC |Escherichia coli [TaxId: 562]
 d1zpvc_ :    (ALA-1)   (SER78)   [view usage] : d.58.18.7 |Ferredoxin-like |ACT-like |SP0238-like |UPF0237 protein SP0238 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d2f1fb2 :    (HIS81)  (SER150)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Escherichia coli [TaxId: 562]
 d3dhxa1 :    (ASP19)   (LEU99)   [view usage] : d.58.18.13 |Ferredoxin-like |ACT-like |NIL domain-like |Methionine import ATP-binding protein MetN |Escherichia coli [TaxId: 562]
 d2fgca1 :   (ARG110)  (THR177)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Thermotoga maritima [TaxId: 2336]
 d2qrrb_ :    (GLY18)   (GLY95)   [view usage] : d.58.18.13 |Ferredoxin-like |ACT-like |NIL domain-like |Methionine import ATP-binding protein MetN |Vibrio parahaemolyticus [TaxId: 670]
 d3ceda1 :   (ASP262)  (GLY341)   [view usage] : d.58.18.13 |Ferredoxin-like |ACT-like |NIL domain-like |Methionine import ATP-binding protein MetN2 |Staphylococcus aureus [TaxId: 1280]
 d1u8sa1 :     (LEU3)   (ARG81)   [view usage] : d.58.18.5 |Ferredoxin-like |ACT-like |Glycine cleavage system transcriptional repressor |putative transcriptional repressor VC2159 |Vibrio cholerae [TaxId: 666]
 d2f1fa2 :    (HIS81)  (SER150)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Escherichia coli [TaxId: 562]
 d2pc6a1 :    (TYR81)  (THR149)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Nitrosomonas europaea [TaxId: 915]
 d3cedb_ :   (ASP262)  (GLY341)   [view usage] : d.58.18.13 |Ferredoxin-like |ACT-like |NIL domain-like |Methionine import ATP-binding protein MetN2 |Staphylococcus aureus [TaxId: 1280]
 d2wvdc2 :    (GLU62)  (LYS140)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d2qrra1 :    (GLY18)   (GLY95)   [view usage] : d.58.18.13 |Ferredoxin-like |ACT-like |NIL domain-like |Methionine import ATP-binding protein MetN |Vibrio parahaemolyticus [TaxId: 670]
 d3dhwc2 :   (CYS265)  (GLY341)   [view usage] : d.58.18.13 |Ferredoxin-like |ACT-like |NIL domain-like |Methionine import ATP-binding protein MetN |Escherichia coli [TaxId: 562]
 d2cadb2 :    (GLU62)  (SER143)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.58