Protein Concepts Dictionary

Tableau information

Concept source:  d4fr8a_  amino acid (a.a.) range (ARG34)(TYR139)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ARG34)   (VAL40) E1
	   (CYS49)   (ASP55) E2
	   (ASP55)   (GLN71) H3
	   (SER74)   (MET79) H4
	   (ASP80)   (ASP98) H5
	   (ARG99)  (GLY111) H6
	  (PRO113)  (TYR139) H7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2      129.5°   E2                                        
H3      -98.8°  -76.9°   H3                                 
H4       51.5°  -97.4°  -49.8°   H4                          
H5      -55.1° -148.5°  134.5° -103.2°   H5                   
H6       86.1°  -76.6° -149.2° -119.1°  -72.6°   H6            
H7      126.2°   41.0°  -37.2°  -75.5° -169.3°  117.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1wnba_ :    (GLU17)  (VAL107)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Putative betaine aldehyde dehydrogenase YdcW |Escherichia coli [TaxId: 562]
 d4e4ga_ :    (GLY16)  (ILE111)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d3i44a_ :    (HIS20)  (PHE121)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
 d3ek1a_ :    (THR28)  (VAL127)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d3v9jb_ :    (ASP77)  (GLU183)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4dalb_ :    (ALA17)  (ASN117)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d2d4ec_ :    (GLY41)  (TYR138)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Thermus thermophilus [TaxId: 300852]
 d2o2pa_ :   (LYS437)  (LYS520)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3k2wh_ :    (ASP26)  (ASP121)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudoalteromonas atlantica [TaxId: 342610]
 d4fr8g_ :    (ARG34)  (LEU119)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
 d2hg2a_ :    (ASP21)  (ALA116)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d1eyya_ :     (ASP6)  (SER107)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
 d3qana_ :    (LYS51)  (ASN152)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bacillus halodurans [TaxId: 86665]
 d3r31a_ :    (THR30)  (VAL111)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d2xdra_ :    (GLY21)  (LEU119)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1ky8a_ :    (GLN32)  (LYS132)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
 d3k2we_ :    (ASP26)  (ASP121)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudoalteromonas atlantica [TaxId: 342610]
 d4e4gc_ :    (GLY16)  (ILE111)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d1uxna_ :    (GLN32)  (ALA126)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
 d1eyyb_ :     (ASN7)  (SER107)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
 d3rhla_ :   (LYS437)  (CYS537)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1uxva_ :    (GLN32)  (ARG124)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN |Thermoproteus tenax [TaxId: 2271]
 d4e4gb_ :    (ARG17)  (ILE111)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d1o9ja_ :    (GLY34)  (ILE139)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Elephant shrew (Elephantulus edwardii) [TaxId: 28737]
 d3rhma_ :   (LYS437)  (LYS520)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1uzba_ :    (LYS50)  (PHE141)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |1-pyrroline-5-carboxylate dehydrogenase |Thermus thermophilus [TaxId: 274]
 d4fr8c_ :    (ARG34)  (TYR118)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Human (Homo sapiens), mitochondrial [TaxId: 9606]
 d4i8pa_ :    (GLY24)  (GLN134)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Maize (Zea mays) [TaxId: 4577]
 d2id2c_ :    (ASN18)  (MET118)   [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
 d3rhja_ :   (LYS437)  (CYS537)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3ek1g_ :    (THR28)  (VAL127)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.82