Tableau information
Concept source: d4oddb_ amino acid (a.a.) range (GLY13)(GLU80)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: EEHEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY13) (THR17) E1
(LEU18) (ASN23) E2
(ASN24) (GLY29) H3
(ARG35) (ASP44) E4
(LEU48) (LYS57) E5
(GLU61) (ARG73) E6
(ASN75) (GLU80) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -59.7° E2
H3 -115.3° 153.2° H3
E4 161.0° 104.6° 83.6° E4
E5 -39.7° -92.7° 75.8° 159.2° E5
E6 118.7° 72.3° -124.4° -42.5° 158.0° E6
E7 -68.7° -76.8° 77.1° 120.6° -51.9° 134.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4odda_ : (GLY13) (GLU80) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Canis lupus [TaxId: 9615]
d1epab_ : (GLY13) (ARG80) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Retinoic acid-binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2lb6a_ : (GLY36) (THR102) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4oddb_ : (GLY13) (GLU80) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Canis lupus [TaxId: 9615]
d2l9ca_ : (GLY36) (THR102) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1sxwa_ : (ASP21) (ASN85) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d2r56a_ : (GLY17) (ALA86) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |beta-Lactoglobulin |Cow (Bos taurus) [TaxId: 9913]
d4iawc_ : (GLY29) (LEU94) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
d2at0x_ : (ASP21) (PHE86) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Nitrophorin 4 |Rhodnius prolixus [TaxId: 13249]
d4r0ba_ : (GLY17) (LYS83) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gnwa_ : (ASP21) (LYS88) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Rhodnius prolixus [TaxId: 13249]
d2e4ja_ : (GLY41) (PRO110) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4orra_ : (GLY41) (SER109) [view usage] : b.60.1.0 |Lipocalins |Lipocalins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.60