Protein Concepts Dictionary

Tableau information

Concept source:  d3klia1  amino acid (a.a.) range (LEU325)(ASN418)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU325)  (LYS331) E1
	  (GLN336)  (TYR342) E2
	  (LYS350)  (ARG356) E3
	  (ASP364)  (ILE382) H4
	  (LYS385)  (LEU391) E5
	  (LYS395)  (TYR405) H6
	  (GLU413)  (ASN418) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2      160.4°   E2                                        
E3      -41.3°  154.4°   E3                                 
H4      151.3°  -35.9°  141.4°   H4                          
E5      -38.1°  125.0°  -65.6°  152.4°   E5                   
H6       79.4° -119.9°   41.7° -100.5°  107.0°   H6            
E7      -45.6°  115.0°  -85.4°  126.4°  -30.3°  125.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2jlea1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus 1 [TaxId: 11676]
 d3irxa1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d2ykna1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |automated matches |Human immunodeficiency virus type 1 bh10 [TaxId: 11678]
 d1bqna2 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3klia1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3hvta2 :   (ILE326)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3bgra1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d2zd1a1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1bqma2 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1uwba2 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1j5oa2 :   (LEU325)  (THR419)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1eo1a_ :     (MET1)   (GLY94)   [view usage] : c.55.5.1 |Ribonuclease H-like motif |Nitrogenase accessory factor-like |MTH1175-like |Hypothetical protein MTH1175 |Methanobacterium thermoautotrophicum [TaxId: 145262]
 d2iaja1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3c6ua2 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Hiv-1 m:b_hxb2r [TaxId: 11706]
 d1ikxa2 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3dlka1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3qo9a1 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3drra2 :   (LEU325)  (ASN418)   [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8,    c.55