Protein Concepts Dictionary

Tableau information

Concept source:  d3gslb1  amino acid (a.a.) range (MET61)(ARG151)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (MET61)   (GLU69) E1
	   (PHE77)   (GLY81) E2
	   (SER93)   (LYS98) E3
	  (GLY103)  (GLY109) H4
	  (ASN114)  (PHE119) E5
	  (THR129)  (ALA140) H6
	  (ILE143)  (ARG151) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2     -133.3°   E2                                        
E3       56.2°  145.7°   E3                                 
H4      118.6°  106.1°  -85.2°   H4                          
E5      -70.3°  -85.9°  122.8°  105.5°   E5                   
H6      -47.5°  153.4°  -60.6°   72.9°   69.4°   H6            
E7      158.3°   55.9° -104.6°  -64.5°  131.1° -136.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1wf8a1 :    (PHE11)   (GLU99)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Neurabin-i |Human (Homo sapiens) [TaxId: 9606]
 d2he2b_ :   (ARG420)  (GLN501)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4h11a_ :    (GLU93)  (ARG184)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3gsla1 :    (SER60)  (ARG151)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1gq4a_ :    (PRO12)   (LEU89)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Na+/H+ exchanger regulatory factor, NHERF |Human (Homo sapiens) [TaxId: 9606]
 d2byga1 :   (VAL192)  (PRO279)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Channel associated protein of synapse-110 |Human (Homo sapiens) [TaxId: 9606]
 d1be9a_ :   (ARG312)  (GLU395)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synaptic protein PSD-95 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3rl7a_ :   (TYR220)  (TYR306)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2d92a_ :    (PRO14)  (SER103)   [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2fnec_ :  (GLN1952) (ASP2044)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Multiple PDZ domain protein |Human (Homo sapiens) [TaxId: 9606]
 d2fneb_ :  (CYS1957) (VAL2040)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Multiple PDZ domain protein |Human (Homo sapiens) [TaxId: 9606]
 d2r4hb_ :     (TYR4)   (THR88)   [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3rl8b_ :   (LYS316)  (PRO405)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1tq3a_ :   (GLU310)  (GLU395)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synaptic protein PSD-95 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2jilb_ :   (VAL151)  (GLU235)   [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2i0ia1 :   (GLU462)  (ALA542)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Discs large protein homolog |Human (Homo sapiens) [TaxId: 9606]
 d2fnea1 :  (LYS1958) (MET2039)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Multiple PDZ domain protein |Human (Homo sapiens) [TaxId: 9606]
 d1tp5a_ :   (ARG312)  (GLU395)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2vwra_ :    (SER-1)  (GLY422)   [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3rl8a_ :   (LYS316)  (SER407)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3lnxa_ :     (ILE6)   (LEU88)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Phosphatase hPTP1e |Human (Homo sapiens) [TaxId: 9606]
 d2g2la_ :   (MET318)  (PRO405)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2dm8a_ :    (MET19)  (ASP102)   [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2jina_ :    (THR10)   (ARG95)   [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3rl8c_ :   (LYS316)  (SER407)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3gslb1 :    (MET61)  (ARG151)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3axaa_ :     (PRO1)   (GLY89)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3vqfa_ :     (PHE4)   (GLN87)   [view usage] : b.36.1.0 |PDZ domain-like |PDZ domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1ujda_ :    (PRO12)  (ASP108)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Hypothetical protein KIAA0559 |Human (Homo sapiens) [TaxId: 9606]
 d1um7a_ :    (ARG17)   (VAL94)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synapse-associated protein 102 |Human (Homo sapiens) [TaxId: 9606]
 d1bfea_ :   (GLU310)  (GLU395)   [view usage] : b.36.1.1 |PDZ domain-like |PDZ domain-like |PDZ domain |Synaptic protein PSD-95 |Norway rat (Rattus norvegicus) [TaxId: 10116]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.36