Tableau information
Concept source: d1ytub1 amino acid (a.a.) range (ASP180)(GLU294)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: EEEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP180) (ASP191) E1
(VAL193) (LYS203) E2
(GLY206) (SER214) E3
(TYR222) (PRO242) H4
(GLU247) (VAL253) E5
(LYS261) (GLU279) H6
(ASP284) (GLU294) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 163.8° E2
E3 -41.2° 151.0° E3
H4 144.2° -25.5° 135.4° H4
E5 -18.5° 149.2° -58.9° 141.6° E5
H6 139.4° -43.3° 109.2° -30.4° 152.5° H6
E7 -37.7° 128.9° -78.9° 125.5° -20.3° 148.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1hjra_ : (ALA1) (ALA102) [view usage] : c.55.3.6 |Ribonuclease H-like motif |Ribonuclease H-like |RuvC resolvase |RuvC resolvase |Escherichia coli [TaxId: 562]
d3kkra_ : (LEU60) (GLY140) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Bovine immunodeficiency virus [TaxId: 417296]
d4htla1 : (ALA4) (ASN102) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1vhxb_ : (SER0) (ASP95) [view usage] : c.55.3.8 |Ribonuclease H-like motif |Ribonuclease H-like |Putative Holliday junction resolvase RuvX |Hypothetical protein YrrK (RuvX) |Bacillus subtilis [TaxId: 1423]
d1ytub1 : (ASP180) (GLU294) [view usage] : c.55.3.10 |Ribonuclease H-like motif |Ribonuclease H-like |PIWI domain |Hypothetical protein AF1318 |Archaeoglobus fulgidus [TaxId: 2234]
d1huxa_ : (SER2) (SER81) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Hydroxyglutaryl-CoA dehydratase component A |Acidaminococcus fermentans [TaxId: 905]
d2f9tb2 : (SER0) (SER81) [view usage] : c.55.1.13 |Ribonuclease H-like motif |Actin-like ATPase domain |CoaX-like |Type III pantothenate kinase, CoaX |Pseudomonas aeruginosa [TaxId: 287]
d3r6ma1 : (LEU5) (SER94) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d1vhxa_ : (ARG2) (LEU93) [view usage] : c.55.3.8 |Ribonuclease H-like motif |Ribonuclease H-like |Putative Holliday junction resolvase RuvX |Hypothetical protein YrrK (RuvX) |Bacillus subtilis [TaxId: 1423]
d4m7xa_ : (VAL3) (VAL69) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |automated matches |Staphylococcus aureus [TaxId: 196620]
d2gela1 : (MET1) (SER93) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
d2f9ta2 : (MSE1) (SER81) [view usage] : c.55.1.13 |Ribonuclease H-like motif |Actin-like ATPase domain |CoaX-like |Type III pantothenate kinase, CoaX |Pseudomonas aeruginosa [TaxId: 287]
d1iv0a_ : (VAL3) (GLU93) [view usage] : c.55.3.8 |Ribonuclease H-like motif |Ribonuclease H-like |Putative Holliday junction resolvase RuvX |Hypothetical protein, YqgF homologue |Thermus thermophilus [TaxId: 274]
d2gupa1 : (MSE1) (ASN99) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Hypothetical protein SP2142 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1okja1 : (LEU3) (SER92) [view usage] : c.55.1.9 |Ribonuclease H-like motif |Actin-like ATPase domain |YeaZ-like |Hypothetical protein YeaZ |Escherichia coli [TaxId: 562]
d2f8sa2 : (ASP496) (ARG601) [view usage] : c.55.3.10 |Ribonuclease H-like motif |Ribonuclease H-like |PIWI domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d1ovqa_ : (GLY3) (GLU96) [view usage] : c.55.3.8 |Ribonuclease H-like motif |Ribonuclease H-like |Putative Holliday junction resolvase RuvX |Hypothetical protein YqgF (RuvX) |Escherichia coli [TaxId: 562]
d4pa1a_ : (ILE62) (ILE143) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Feline immunodeficiency virus [TaxId: 11674]
d1z05a3 : (TRP84) (ASN192) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Transcriptional regulator VC2007 |Vibrio cholerae [TaxId: 666]
d2gtdb1 : (MET1) (VAL88) [view usage] : c.55.1.13 |Ribonuclease H-like motif |Actin-like ATPase domain |CoaX-like |Type III pantothenate kinase, CoaX |Thermotoga maritima [TaxId: 2336]
d1zc6a1 : (ARG11) (ALA108) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |Probable N-acetylglucosamine kinase CV2896 |Chromobacterium violaceum [TaxId: 536]
d1edza1 : (THR203) (ALA275) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Methylenetetrahydrofolate dehydrogenase/cyclohydrolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4m7ya_ : (VAL3) (VAL69) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |automated matches |Staphylococcus aureus [TaxId: 196620]
d1z6ra2 : (TRP85) (HIS194) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Mlc protein |Escherichia coli [TaxId: 562]
d4nb4h_ : (VAL3) (VAL69) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Type II pantothenate kinase, CoaW |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, c.55