Protein Concepts Dictionary

Tableau information

Concept source:  d1rkra_  amino acid (a.a.) range (VAL5)(THR96)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL5)   (ASN10) E1
	   (LYS18)   (SER23) E2
	   (LYS27)   (GLY37) E3
	   (MET44)   (LYS52) E4
	   (LYS52)   (GLY67) H5
	   (ILE81)   (GLY89) E6
	   (GLY90)   (THR96) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2     -167.1°   E2                                        
E3      -21.4°  156.3°   E3                                 
E4      140.3°  -46.1°  157.0°   E4                          
H5      -47.4°  119.9°  -48.7°  142.7°   H5                   
E6      -39.8°  136.5°  -19.8°  171.2°  -45.9°   E6            
E7      146.9°  -35.4°  168.0°  -14.8°  131.3°  171.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3fq2a_ :     (VAL5)   (PHE97)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3in2a_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1azna_ :     (CYS3)   (PHE97)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3fq1a_ :     (CYS3)   (PHE97)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d4mfha_ :     (VAL5)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2h3xc_ :     (ASP4)   (ASP98)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Alcaligenes faecalis [TaxId: 511]
 d4hz1b_ :     (CYS3)   (ASP98)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1ov8a_ :    (GLN17)  (THR109)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Auracyanin |Chloroflexus aurantiacus [TaxId: 1108]
 d4ko6a_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3fswb_ :     (CYS3)   (PHE97)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3azua_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d4ko5a_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1cuoa_ :     (THR5)   (LYS98)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Methylomonas sp. j [TaxId: 32038]
 d4ko9a_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1aiza_ :     (ALA5)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Alcaligenes denitrificans [TaxId: 32002]
 d1etja_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d4k9ja_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3in0a_ :     (VAL5)   (PHE97)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d1r1ca_ :     (VAL5)   (PHE97)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2azaa_ :    (MET13)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Alcaligenes denitrificans [TaxId: 32002]
 d2xv3a_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
 d1jvla_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d2i7oa_ :     (CYS3)   (THR96)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
 d3np3a_ :     (CYS3)   (PHE97)   [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.6