Tableau information
Concept source: d4c4ba_ amino acid (a.a.) range (VAL17)(GLU125)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: EEEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL17) (ARG22) E1
(VAL28) (VAL34) E2
(TRP50) (GLN56) E3
(PHE62) (ALA73) E4
(GLY85) (PHE96) E5
(LYS103) (TYR109) E6
(GLY114) (GLU125) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 161.1° E2
E3 -56.7° 139.2° E3
E4 113.3° -49.0° 166.5° E4
E5 -48.0° 148.9° -10.3° 161.1° E5
E6 135.3° -33.7° 162.4° -31.1° 162.5° E6
E7 -23.6° 155.0° -41.7° 125.5° -36.6° 154.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4bfja_ : (VAL15) (GLU125) [view usage] : b.1.13.1 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |Superoxide reductase-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1ggta3 : (ILE632) (ARG727) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d4c4ba_ : (VAL17) (GLU125) [view usage] : b.1.13.1 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |Superoxide reductase-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2ee3a_ : (HIS13) (ALA98) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bfkb_ : (VAL15) (GLU125) [view usage] : b.1.13.1 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |Superoxide reductase-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1ehkb1 : (ASN93) (VAL166) [view usage] : b.6.1.2 |Cupredoxin-like |Cupredoxins |Periplasmic domain of cytochrome c oxidase subunit II |Cytochrome c oxidase |Thermus thermophilus, ba3 type [TaxId: 274]
d1b4ra_ : (ALA8) (ALA87) [view usage] : b.1.3.1 |Immunoglobulin-like beta-sandwich |PKD domain |PKD domain |Polycystein-1, PKD-1 |Human (Homo sapiens) [TaxId: 9606]
d4c4ua_ : (VAL15) (LEU124) [view usage] : b.1.13.1 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |Superoxide reductase-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2d3va1 : (LEU3) (VAL94) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4bffc_ : (VAL15) (GLU125) [view usage] : b.1.13.0 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1nqjb_ : (SER928) (VAL1006) [view usage] : b.18.1.36 |Galactose-binding domain-like |Galactose-binding domain-like |Collagen-binding domain |Class 1 collagenase |Clostridium histolyticum [TaxId: 1498]
d1jbja2 : (GLU7) (ALA77) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |CD3 epsilon chain ectodomain fragment |Mouse (Mus musculus) [TaxId: 10090]
d1sy6a1 : (LEU8) (MET81) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |CD3 gamma chain ectodomain fragment |Human (Homo sapiens) [TaxId: 9606]
d4bffa_ : (VAL15) (LEU124) [view usage] : b.1.13.0 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d4bfka_ : (VAL15) (GLU125) [view usage] : b.1.13.1 |Immunoglobulin-like beta-sandwich |Superoxide reductase-like |Superoxide reductase-like |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1qr4a2 : (VAL88) (THR175) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Tenascin |Chicken (Gallus gallus) [TaxId: 9031]
d1fiea3 : (THR628) (ARG727) [view usage] : b.1.5.1 |Immunoglobulin-like beta-sandwich |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Transglutaminase, two C-terminal domains |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1bhga1 : (ASP229) (ARG327) [view usage] : b.1.4.1 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |beta-Galactosidase/glucuronidase domain |beta-Glucuronidase |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.18, b.6, b.1