Protein Concepts Dictionary

Tableau information

Concept source:  d2j55j_  amino acid (a.a.) range (ARG311)(ALA383)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ARG311)  (ASP317) E1
	  (ALA325)  (GLY330) E2
	  (SER335)  (ASP341) E3
	  (LYS343)  (LEU349) E4
	  (LYS354)  (ASP360) E5
	  (LEU367)  (GLN372) E6
	  (GLN378)  (ALA383) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2      163.6°   E2                                        
E3      -42.9°  123.5°   E3                                 
E4      145.0°  -43.7°  160.5°   E4                          
E5      -39.8°  141.3°  -42.2°  157.2°   E5                   
E6      128.7°  -46.1°  125.4°  -35.8°  166.2°   E6            
E7      -32.8°  131.7°   14.2°  155.3°  -46.1°  120.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1mg2a_ :   (PHE312)  (ALA383)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
 d1yfqa_ :   (GLY216)  (ASP304)   [view usage] : b.69.4.2 |7-bladed beta-propeller |WD40 repeat-like |Cell cycle arrest protein BUB3 |Cell cycle arrest protein BUB3 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2d0vi_ :   (LEU452)  (GLU524)   [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |automated matches |Hyphomicrobium denitrificans [TaxId: 53399]
 d1k32a2 :   (ARG210)  (ASP281)   [view usage] : b.68.7.1 |6-bladed beta-propeller |Tricorn protease N-terminal domain |Tricorn protease N-terminal domain |Tricorn protease N-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
 d2j55j_ :   (ARG311)  (ALA383)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d2gc4a_ :   (THR308)  (ALA383)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d1w6sa_ :   (LEU452)  (THR524)   [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
 d3l4md_ :   (THR308)  (ALA383)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d2mtah_ :   (PHE299)  (ALA370)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
 d2bbkh_ :   (PHE299)  (ALA370)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
 d2j56h_ :   (THR308)  (ALA383)   [view usage] : b.69.2.0 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
 d1mdah_ :   (ASN295)  (GLN365)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]
 d1ojma2 :   (LEU824)  (LEU890)   [view usage] : b.24.1.1 |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase-like, C-terminal domain |Hyaluronate lyase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1flga_ :   (VAL465)  (GLU537)   [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Ethanol dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.68,    b.70,    b.69,    b.24