Protein Concepts Dictionary

Tableau information

Concept source:  d2dm1a_  amino acid (a.a.) range (GLY8)(GLY65)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY8)   (TYR14) E1
	   (TYR14)   (ASP20) E2
	   (LEU24)   (GLU28) E3
	   (ASP30)   (ILE34) E4
	   (GLY43)   (GLY47) E5
	   (GLY54)   (THR59) E6
	   (TYR60)   (GLY65) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2       97.0°   E2                                        
E3      -68.0° -162.0°   E3                                 
E4      143.0°   66.8° -131.2°   E4                          
E5     -104.4°  -85.0°   89.1°  106.8°   E5                   
E6       75.9°  140.2°  -48.2°  -95.4°  134.7°   E6            
E7      143.5° -118.6°   75.6°  -66.3°   73.1°  -80.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1k9aa1 :    (THR12)   (GLY70)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Carboxyl-terminal src kinase (csk) |Human (Homo sapiens) [TaxId: 9606]
 d2k79a_ :   (THR174)  (PRO231)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2dl8a_ :     (GLU8)   (THR66)   [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2yuna_ :     (SER6)   (PRO63)   [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1k0xa_ :    (SER23)   (ASP88)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Melanoma inhibitory activity protein |Human (Homo sapiens) [TaxId: 9606]
 d1wi7a_ :     (SER6)   (GLY64)   [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2lz6b_ :     (ALA5)   (SER64)   [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4hcka_ :    (ILE81)  (ASP137)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Hemapoetic cell kinase Hck |Human (Homo sapiens) [TaxId: 9606]
 d2dl4a_ :     (GLY7)   (GLY64)   [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2b86a_ :     (MET1)   (LYS59)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Nck-2 |Human (Homo sapiens) [TaxId: 9606]
 d2kr3a_ :     (GLU7)   (ASP70)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d2dm1a_ :     (GLY8)   (GLY65)   [view usage] : b.34.2.0 |SH3-like barrel |SH3-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2rmoa_ :     (GLU7)   (ASP70)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d2ak5a_ :     (GLN8)   (PRO65)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1jqqd_ :    (PHE16)   (ARG78)   [view usage] : b.34.2.1 |SH3-like barrel |SH3-domain |SH3-domain |Peroxisomal membrane protein Pex13p |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.34