Tableau information
Concept source: d2e7aa_ amino acid (a.a.) range (GLN47)(ALA156)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: EEEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN47) (SER52) E1
(TYR56) (GLN67) E2
(HIS73) (THR85) E3
(LEU93) (SER99) E4
(ASN112) (VAL123) E5
(ASP130) (ARG138) E6
(TYR151) (ALA156) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 168.0° E2
E3 -36.0° 155.2° E3
E4 151.0° -17.6° 172.7° E4
E5 -17.8° 172.6° -24.0° 163.2° E5
E6 155.3° -14.8° 168.2° -6.8° 163.0° E6
E7 -11.0° 173.8° -29.9° 157.4° -7.5° 159.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ic0a_ : (GLU38) (VAL111) [view usage] : b.6.1.4 |Cupredoxin-like |Cupredoxins |Nitrosocyanin |Red copper protein nitrosocyanin |Nitrosomonas europaea [TaxId: 915]
d2iwfa2 : (PRO518) (GLU596) [view usage] : b.6.1.0 |Cupredoxin-like |Cupredoxins |automated matches |automated matches |Achromobacter cycloclastes [TaxId: 223]
d1euta1 : (CYS405) (GLY502) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Sialidase, "linker" domain |Micromonospora viridifaciens [TaxId: 1881]
d2yoab_ : (GLY274) (GLY379) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2tuna_ : (GLN47) (LEU157) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d1ibzc_ : (GLU38) (VAL111) [view usage] : b.6.1.4 |Cupredoxin-like |Cupredoxins |Nitrosocyanin |Red copper protein nitrosocyanin |Nitrosomonas europaea [TaxId: 915]
d3knba_ : (PRO5) (ILE97) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cwva3 : (SER702) (PHE793) [view usage] : b.1.14.1 |Immunoglobulin-like beta-sandwich |Invasin/intimin cell-adhesion fragments |Invasin/intimin cell-adhesion fragments |Invasin |Yersinia pseudotuberculosis [TaxId: 633]
d4c4kt_ : (PRO4) (SER98) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3q5oa_ : (GLU9) (ILE100) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4g3yc_ : (GLN47) (LEU157) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d1ux7a_ : (TYR45) (SER130) [view usage] : b.18.1.28 |Galactose-binding domain-like |Galactose-binding domain-like |Family 36 carbohydrate binding module, CBM36 |Endo-1,4-beta-xylanase D |Paenibacillus polymyxa [TaxId: 1406]
d1fwxb1 : (GLU501) (VAL578) [view usage] : b.6.1.4 |Cupredoxin-like |Cupredoxins |Nitrosocyanin |Nitrous oxide reductase, C-terminal domain |Paracoccus denitrificans [TaxId: 266]
d2e7aa_ : (GLN47) (ALA156) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3l9jt_ : (GLN47) (LEU157) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d2wwmd_ : (SER0) (ILE99) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ibza_ : (GLU38) (VAL111) [view usage] : b.6.1.4 |Cupredoxin-like |Cupredoxins |Nitrosocyanin |Red copper protein nitrosocyanin |Nitrosomonas europaea [TaxId: 915]
d5tswa_ : (GLN47) (ALA156) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |Tumor necrosis factor (TNF) |Human (Homo sapiens) [TaxId: 9606]
d2wnub_ : (GLY131) (LEU219) [view usage] : b.22.1.1 |TNF-like |TNF-like |TNF-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wp3t_ : (PRO4) (ILE99) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.18, b.6, b.1, b.22, b.7