Protein Concepts Dictionary

Tableau information

Concept source:  d1z1wa1  amino acid (a.a.) range (GLU4)(ASP81)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLU4)   (ASP13) E1
	   (ARG17)   (ALA27) E2
	   (ASP31)   (ASP35) E3
	   (GLY38)   (ASN47) E4
	   (THR51)   (ASP56) E5
	   (GLN58)   (PRO63) E6
	   (GLN69)   (ASP81) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2      165.9°   E2                                        
E3      -44.1°  147.7°   E3                                 
E4      133.4°  -32.6°  153.9°   E4                          
E5      -71.5°  122.2°  -44.1°  154.6°   E5                   
E6      126.9°  -39.4°  165.6°  -17.8°  150.0°   E6            
E7      -38.7°  155.2°  -14.4°  166.3°  -37.1°  165.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4gaaa1 :    (LYS16)  (LYS108)   [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
 d3og2a4 :   (PRO718)  (THR805)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
 d1ua7a1 :   (PRO349)  (THR413)   [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Bacterial alpha-Amylase |Bacillus subtilis [TaxId: 1423]
 d3dc0a2 :   (PRO349)  (THR413)   [view usage] : b.71.1.0 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |automated matches |automated matches |Bacillus sp. [TaxId: 535911]
 d4qpea1 :    (LEU19)   (LEU95)   [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Aminopeptidase N (APN) N-terminal domain |Neisseria meningitidis [TaxId: 122586]
 d3fuia1 :    (LYS19)  (LYS111)   [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Leukotriene A4 hydrolase N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d3fh5a1 :    (LYS19)  (LYS111)   [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Leukotriene A4 hydrolase N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d3chpa2 :    (LYS19)  (LYS111)   [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Leukotriene A4 hydrolase N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d1gw6a2 :    (LYS19)  (LYS111)   [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Leukotriene A4 hydrolase N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d1z1wa1 :     (GLU4)   (ASP81)   [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Tricorn protease interacting factor F3 N-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
 d1w8xn_ :    (GLY21)   (GLY96)   [view usage] : i.6.1.1 |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |Viruses and virus-receptor complexes |PRD1 capsid assembly |Bacteriophage PRD1 [TaxId: 10658]
 d1baga1 :   (PRO349)  (THR413)   [view usage] : b.71.1.1 |Glycosyl hydrolase domain |Glycosyl hydrolase domain |alpha-Amylases, C-terminal beta-sheet domain |Bacterial alpha-Amylase |Bacillus subtilis [TaxId: 1423]
 d4qhpa1 :    (LEU19)   (LEU95)   [view usage] : b.98.1.1 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |Aminopeptidase N (APN) N-terminal domain |Neisseria meningitidis [TaxId: 122586]
 d3q7ja1 :     (GLU4)   (ASP81)   [view usage] : b.98.1.0 |Zn aminopeptidase N-terminal domain |Zn aminopeptidase N-terminal domain |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 273075]
 d4uyba3 :   (GLU279)  (ASN367)   [view usage] : b.132.1.0 |Supernatant protein factor (SPF), C-terminal domain |Supernatant protein factor (SPF), C-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   i.6,    b.18,    b.71,   b.132,    b.98