Tableau information
Concept source: d2yrza_ amino acid (a.a.) range (THR22)(GLN111)
nSSEs in this Concept: 7
String of secondary struct.elems. (SSEs) defining this concept: EEEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR22) (ALA28) E1
(LEU34) (GLN39) E2
(GLY49) (LEU56) E3
(GLU61) (ILE67) E4
(THR73) (ASP79) E5
(HIS84) (GLN95) E6
(GLY99) (GLN111) E7
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 156.3° E2
E3 -59.3° 138.0° E3
E4 110.1° -48.5° 162.9° E4
E5 -40.5° 163.1° -32.4° 146.4° E5
E6 133.7° -36.5° 161.5° -35.3° 144.5° E6
E7 -23.8° 147.8° -46.4° 118.4° -44.2° 151.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1iama1 : (VAL89) (ALA178) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |Intercellular cell adhesion molecule-1 (ICAM-1) |Human (Homo sapiens) [TaxId: 9606]
d1qg3b1 : (GLN1131) (ARG1214) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Integrin beta-4 subunit |Human (Homo sapiens) [TaxId: 9606]
d3d1md_ : (ILE827) (GLU922) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gi7a2 : (ALA92) (VAL182) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1cn4a1 : (LEU26) (VAL112) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Erythropoietin (EPO) receptor |Human (Homo sapiens) [TaxId: 9606]
d1bj8a_ : (VAL4) (ASP96) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d2dbja_ : (SER19) (PHE114) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qg3a2 : (ARG1225) (ILE1313) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Integrin beta-4 subunit |Human (Homo sapiens) [TaxId: 9606]
d1cvra1 : (ALA360) (GLU432) [view usage] : b.1.18.12 |Immunoglobulin-like beta-sandwich |E set domains |Gingipain R (RgpB), C-terminal domain |Gingipain R (RgpB), C-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d2quoa_ : (THR235) (LYS318) [view usage] : b.18.1.37 |Galactose-binding domain-like |Galactose-binding domain-like |Clostridium perfringens enterotoxin (CPE), C-terminal domain |Clostridium perfringens enterotoxin (CPE), C-terminal domain |Clostridium perfringens [TaxId: 1502]
d1ebaa1 : (LEU26) (ASN116) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Erythropoietin (EPO) receptor |Human (Homo sapiens) [TaxId: 9606]
d3vgga1 : (TYR4) (ASP68) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Glycosyltrehalose trehalohydrolase, N-terminal domain N |Sulfolobus solfataricus, km1 [TaxId: 2287]
d2dlha_ : (SER19) (THR112) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Receptor-type tyrosine-protein phosphatase delta, PTPRD |Human (Homo sapiens) [TaxId: 9606]
d1wfna1 : (VAL17) (VAL111) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Sidekick 2 |Human (Homo sapiens) [TaxId: 9606]
d1x4xa1 : (GLN10) (THR97) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) |Human (Homo sapiens) [TaxId: 9606]
d1wk0a_ : (LYS23) (THR109) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) |Human (Homo sapiens) [TaxId: 9606]
d1guia_ : (GLN67) (ASP151) [view usage] : b.18.1.14 |Galactose-binding domain-like |Galactose-binding domain-like |CBM4/9 |Carbohydrate binding module from laminarinase 16A |Thermotoga maritima [TaxId: 2336]
d3n1gc_ : (VAL713) (GLU808) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3r8qa1 : (ALA1) (ARG82) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wioa4 : (MET292) (PRO363) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |CD4 C2-set domains |Human (Homo sapiens) [TaxId: 9606]
d3bplc2 : (VAL130) (GLY225) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor common gamma chain |Human (Homo sapiens) [TaxId: 9606]
d1x4za1 : (GLY13) (ALA106) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Brother of CDO precursor (BOC) |Mouse (Mus musculus) [TaxId: 10090]
d1cn4b1 : (LEU26) (ASN116) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Erythropoietin (EPO) receptor |Human (Homo sapiens) [TaxId: 9606]
d1h6xa_ : (GLY55) (GLU150) [view usage] : b.18.1.7 |Galactose-binding domain-like |Galactose-binding domain-like |CBM22 |Xylan-binding domain |Clostridium thermocellum [TaxId: 1515]
d1esoa_ : (SER17) (LYS148) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Escherichia coli [TaxId: 562]
d1x5aa1 : (SER15) (THR98) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Ephrin type-A receptor 1 |Mouse (Mus musculus) [TaxId: 10090]
d1pgrb1 : (LEU11) (ASP102) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Granulocyte colony-stimulating factor (GC-SF) receptor |Mouse (Mus musculus) [TaxId: 10090]
d3n1fd_ : (ILE827) (GLU922) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1k85a_ : (MET558) (ALA629) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin type III domain from chitinase A1. |Bacillus circulans [TaxId: 1397]
d2ed9a_ : (SER29) (THR121) [view usage] : b.1.2.0 |Immunoglobulin-like beta-sandwich |Fibronectin type III |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1x5xa1 : (SER13) (GLU94) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) |Human (Homo sapiens) [TaxId: 9606]
d3ul4a_ : (ARG22) (LYS120) [view usage] : b.2.2.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Carbohydrate-binding domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 203119]
d1fnfa3 : (LEU1327) (GLN1413) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
d3jwdc2 : (PHE1098) (LEU1177) [view usage] : b.1.1.3 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C2 set domains |CD4 C2-set domains |Human (Homo sapiens) [TaxId: 9606]
d2wwna_ : (THR27) (GLU161) [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |automated matches |Yersinia pseudotuberculosis [TaxId: 633]
d2ibgb1 : (ALA575) (ARG672) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Hedgehog receptor iHog |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1wj3a_ : (VAL25) (ARG108) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Contactin 3 (KIAA1496) |Human (Homo sapiens) [TaxId: 9606]
d1va9a1 : (VAL22) (THR113) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Down syndrome cell adhesion molecule-like protein 1, DSCAML1 |Human (Homo sapiens) [TaxId: 9606]
d3oska_ : (GLY17) (TYR100) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gi7b1 : (LYS7) (LEU78) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bgla2 : (PHE626) (ARG721) [view usage] : b.1.4.1 |Immunoglobulin-like beta-sandwich |beta-Galactosidase/glucuronidase domain |beta-Galactosidase/glucuronidase domain |beta-Galactosidase, domains 2 and 4 |Escherichia coli [TaxId: 562]
d1wlga_ : (ASN178) (ASN281) [view usage] : b.152.1.1 |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Flagellar hook protein flgE |Salmonella typhimurium [TaxId: 90371]
d2dzeb_ : (ILE3) (MET118) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2xh6a2 : (THR235) (LYS318) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d2fnba_ : (LEU12) (GLN93) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
d2cuha1 : (GLN13) (GLY95) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Tenascin-X |Human (Homo sapiens) [TaxId: 9606]
d2gysb4 : (ASN319) (THR418) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d1fnfa1 : (PRO1142) (VAL1226) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Fibronectin, different Fn3 modules |Human (Homo sapiens) [TaxId: 9606]
d1x5ia1 : (SER33) (ARG117) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Neogenin |Human (Homo sapiens) [TaxId: 9606]
d1pvha1 : (LEU110) (PHE192) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Cytokine receptor gp130 cytokine-binding domains |Human (Homo sapiens) [TaxId: 9606]
d1ovzb1 : (PRO8) (ASP92) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Ig alpha Fc receptor, FCARI (CD89) |Human (Homo sapiens) [TaxId: 9606]
d4iefb2 : (ALA589) (GLU661) [view usage] : b.1.18.0 |Immunoglobulin-like beta-sandwich |E set domains |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 242619]
d2yrza_ : (THR22) (GLN111) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Integrin beta-4 subunit |Human (Homo sapiens) [TaxId: 9606]
d2erjb2 : (SER6) (MET93) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Interleukin-2 receptor beta chain |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.18, b.2, b.1, b.152