Protein Concepts Dictionary

Tableau information

Concept source:  d2cmeb1  amino acid (a.a.) range (ALA12)(LYS98)

nSSEs in this Concept: 7

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA12)   (ASP17) E1
	   (GLN21)   (THR25) E2
	   (PRO40)   (ARG48) E3
	   (ASN52)   (LEU62) E4
	   (PHE70)   (PRO74) E5
	   (GLN78)   (THR84) E6
	   (PHE92)   (LYS98) E7

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                               
E2      -76.0°   E2                                        
E3      146.6°  133.2°   E3                                 
E4      -35.7°   64.9°  131.9°   E4                          
E5      114.6° -132.7°  -61.3°  147.7°   E5                   
E6      129.8°  -93.1°  -72.4°  154.5°  -43.3°   E6            
E7      134.3°  102.9°  -38.8°  101.5°  -99.6°  -95.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2cmeb1 :    (ALA12)   (LYS98)   [view usage] : b.164.1.1 |SARS ORF9b-like |'SARS ORF9b-like |SARS ORF9b-like |Hypothetical protein 5 (ORF-9b) |SARS coronavirus [TaxId: 227859]
 d2cmea1 :    (ALA12)   (LYS98)   [view usage] : b.164.1.1 |SARS ORF9b-like |'SARS ORF9b-like |SARS ORF9b-like |Hypothetical protein 5 (ORF-9b) |SARS coronavirus [TaxId: 227859]
 d2cmec_ :    (ALA12)   (LYS98)   [view usage] : b.164.1.1 |SARS ORF9b-like |'SARS ORF9b-like |SARS ORF9b-like |Hypothetical protein 5 (ORF-9b) |SARS coronavirus [TaxId: 227859]
 d2cmee1 :    (ALA12)   (LYS98)   [view usage] : b.164.1.1 |SARS ORF9b-like |'SARS ORF9b-like |SARS ORF9b-like |Hypothetical protein 5 (ORF-9b) |SARS coronavirus [TaxId: 227859]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 b.164