Protein Concepts Dictionary

Tableau information

Concept source:  d1yfdb_  amino acid (a.a.) range (LEU186)(TRP338)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU186)  (GLU222) H1
	  (MET224)  (GLY255) H2
	  (ASP258)  (CYS268) H3
	  (CYS268)  (ARG292) H4
	  (ASP302)  (GLY320) H5
	  (ILE332)  (TRP338) H6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
H2     -154.4°   H2                                 
H3      -63.7° -109.5°   H3                          
H4      -28.1° -166.7°  -58.0°   H4                   
H5      141.7°  -33.7° -142.1°  159.5°   H5            
H6      100.2°  -92.0°  157.0°   99.9°  -60.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1biqb_ :   (ILE206)  (TRP338)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
 d1mrra_ :   (LEU186)  (TRP338)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
 d1yfdb_ :   (LEU186)  (TRP338)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
 d4bmrb_ :   (LYS148)  (LEU287)   [view usage] : a.25.1.0 |Ferritin-like |Ferritin-like |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
 d1jprb_ :   (LEU186)  (TRP338)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
 d1mxra_ :   (LEU186)  (TRP338)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
 d1yfda1 :   (LEU186)  (VAL340)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
 d1av8a_ :   (SER185)  (TRP338)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Escherichia coli [TaxId: 562]
 d3n37a_ :   (PHE162)  (SER287)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d4m1hd_ :   (SER174)  (ASN325)   [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |automated matches |Chlamydia trachomatis [TaxId: 813]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.25