Protein Concepts Dictionary

Tableau information

Concept source:  d1u87a1  amino acid (a.a.) range (CYS85)(SER195)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (CYS85)  (SER112) H1
	  (ASP114)  (LEU126) H2
	  (PRO127)  (CYS138) H3
	  (HIS150)  (ASP166) H4
	  (PRO174)  (ALA185) H5
	  (ILE186)  (SER195) H6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
H2     -150.0°   H2                                 
H3     -147.8°  -38.8°   H3                          
H4       22.4° -127.6° -137.1°   H4                   
H5      -99.8°  104.2°   67.3° -115.9°   H5            
H6      -22.6° -168.8° -138.4°  -44.0°  -78.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4fyra4 :   (MET693)  (GLY804)   [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1u3ia2 :    (THR88)  (ASN205)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Blood fluke (Schistosoma mansoni) [TaxId: 6183]
 d2r5ga2 :   (GLU108)  (CYS229)   [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2hnla2 :   (LEU126)  (LYS219)   [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Onchocerca volvulus [TaxId: 6282]
 d4l8ea2 :    (ARG97)  (ASN209)   [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Xenorhabdus nematophila [TaxId: 406817]
 d1m0ua1 :   (THR127)  (LYS243)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class sigma GST |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2yd0a4 :   (MET671)  (THR768)   [view usage] : a.118.1.26 |alpha-alpha superhelix |ARM repeat |ERAP1 C-terminal-like |ERAP1 C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d1fw1a1 :   (LEU116)  (GLN207)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class zeta GST |Human (Homo sapiens) [TaxId: 9606]
 d1guka1 :    (ASP85)  (GLN199)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class alpha GST |Mouse (Mus musculus), (a1-4) [TaxId: 10090]
 d2c8ua1 :    (THR88)  (SER204)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |automated matches |Blood fluke (Schistosoma haematobium) [TaxId: 6185]
 d1u87a1 :    (CYS85)  (SER195)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class alpha GST |Schistosoma japonicum [TaxId: 6182]
 d3se6a4 :   (SER692)  (ALA799)   [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1gsua1 :    (GLU90)  (SER199)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class mu GST |Chicken (Gallus gallus) [TaxId: 9031]
 d1oe7a1 :    (THR88)  (ALA207)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Class alpha GST |Blood fluke (Schistosoma haematobium) [TaxId: 6185]
 d1okta1 :    (SER89)  (ASN205)   [view usage] : a.45.1.1 |GST C-terminal domain-like |GST C-terminal domain-like |Glutathione S-transferase (GST), C-terminal domain |Pf GST |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d3w8sa2 :   (ARG103)  (THR200)   [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Necator americanus [TaxId: 51031]
 d1zl9a2 :   (TYR107)  (THR201)   [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d2ws2a2 :   (VAL102)  (THR198)   [view usage] : a.45.1.0 |GST C-terminal domain-like |GST C-terminal domain-like |automated matches |automated matches |Haemonchus contortus [TaxId: 6289]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.118,    a.45