Protein Concepts Dictionary

Tableau information

Concept source:  d2z38a_  amino acid (a.a.) range (THR175)(THR319)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR175)  (PRO187) H1
	  (ASP194)  (THR213) H2
	  (GLY223)  (GLY228) H3
	  (TRP267)  (LEU278) H4
	  (PRO293)  (MET305) H5
	  (SER313)  (THR319) H6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
H2      122.2°   H2                                 
H3       68.6°   93.6°   H3                          
H4       75.6° -137.6°  -54.6°   H4                   
H5      -41.7°  114.0° -109.8°  103.9°   H5            
H6      -86.2°  134.7° -131.2°  -79.4°  -62.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2z38a_ :   (THR175)  (THR319)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Brassica juncea [TaxId: 3707]
 d4msta_ :    (THR80)  (THR223)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
 d4j0la_ :    (THR30)  (GLY174)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Secale cereale [TaxId: 4550]
 d4mstb_ :    (TYR81)  (THR223)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
 d3iwra_ :   (THR117)  (THR260)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Oryza sativa [TaxId: 39947]
 d2baaa_ :    (THR30)  (ALA173)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |Plant class II chitinase |Barley (Hordeum vulgare) [TaxId: 4513]
 d1cnsa_ :    (THR30)  (VAL173)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |Plant class II chitinase |Barley (Hordeum vulgare) [TaxId: 4513]
 d3cqla_ :    (THR30)  (THR173)   [view usage] : d.2.1.1 |Lysozyme-like |Lysozyme-like |Family 19 glycosidase |automated matches |Papaya (Carica papaya) [TaxId: 3649]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.2