Protein Concepts Dictionary

Tableau information

Concept source:  d3kxsa_  amino acid (a.a.) range (VAL27)(THR128)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (VAL27)   (TYR38) H1
	   (TYR38)   (SER44) H2
	   (SER49)   (ASN75) H3
	   (SER81)   (THR91) H4
	   (VAL93)  (THR109) H5
	  (GLU113)  (THR128) H6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
H2      -81.2°   H2                                 
H3     -141.1°  -91.5°   H3                          
H4       52.1°   94.0°  166.6°   H4                   
H5       25.5°  100.1° -155.7°  -33.9°   H5            
H6      152.2° -120.8°   61.1° -105.8°  126.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3kxse_ :    (VAL27)  (THR128)   [view usage] : a.62.1.1 |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |automated matches |Hepatitis b virus [TaxId: 10419]
 d4bmga_ :    (SER26)  (THR128)   [view usage] : a.62.1.1 |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |automated matches |Hepatitis B virus [TaxId: 10407]
 d3kxsb_ :    (SER26)  (THR128)   [view usage] : a.62.1.1 |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |automated matches |Hepatitis b virus [TaxId: 10419]
 d3kxsd_ :    (SER26)  (THR128)   [view usage] : a.62.1.1 |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |automated matches |Hepatitis b virus [TaxId: 10419]
 d3kxsa_ :    (VAL27)  (THR128)   [view usage] : a.62.1.1 |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |automated matches |Hepatitis b virus [TaxId: 10419]
 d1qgtb_ :    (SER26)  (ARG127)   [view usage] : a.62.1.1 |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B viral capsid (hbcag) |Hepatitis B virus [TaxId: 10407]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  a.62