Tableau information
Concept source: d4gggb_ amino acid (a.a.) range (ASP25)(ASN99)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: HHHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP25) (SER36) H1
(SER41) (ASN50) H2
(SER52) (HIS67) H3
(VAL68) (ARG73) E4
(GLN76) (LEU82) E5
(ILE85) (ASN99) H6
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 116.6° H2
H3 -80.5° 115.7° H3
E4 62.9° 125.6° -117.4° E4
E5 -91.9° 64.5° 52.8° 154.8° E5
H6 -114.6° 5.1° 111.1° -129.5° -59.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2esna1 : (ASP9) (ARG90) [view usage] : a.4.5.37 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |LysR-like transcriptional regulators |Probable LysR-type transcriptional regulator PA0477 |Pseudomonas aeruginosa [TaxId: 287]
d2qyoa1 : (ILE41) (VAL109) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d3bpxa_ : (ASP33) (ARG117) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Methanobacterium thermoautotrophicum
d2gaua1 : (HIS152) (ARG230) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Transcriptional regulator PG0396, C-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d2co5a1 : (ILE9) (CYS93) [view usage] : a.4.5.48 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F93-like |STIV F93 |Sulfolobus turreted icosahedral virus [TaxId: 269145]
d1fp1d1 : (ASN48) (VAL124) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Chalcone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d2bv6a1 : (THR37) (LEU109) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Transcriptional regulator MgrA |Staphylococcus aureus [TaxId: 1280]
d2obpa1 : (ALA16) (PRO92) [view usage] : a.4.5.71 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ReutB4095-like |Putative DNA-binding protein ReutB4095 |Ralstonia eutropha [TaxId: 106590]
d4esba_ : (LEU10) (GLY104) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d3f8fb_ : (GLU7) (ILE115) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d1z9ca_ : (THR39) (VAL112) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Organic hydroperoxide resistance transcriptional regulator OhrR |Bacillus subtilis [TaxId: 1423]
d1f4ka_ : (LYS14) (PHE122) [view usage] : a.4.5.7 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication terminator protein (RTP) |Replication terminator protein (RTP) |Bacillus subtilis [TaxId: 1423]
d3ilwa_ : (PRO50) (ARG143) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1mkmb1 : (THR3) (ARG73) [view usage] : a.4.5.33 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Transcriptional regulator IclR, N-terminal domain |Transcriptional regulator IclR, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d1z9cc_ : (THR39) (VAL112) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Organic hydroperoxide resistance transcriptional regulator OhrR |Bacillus subtilis [TaxId: 1423]
d3voda_ : (ALA40) (THR124) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2fswa1 : (GLY21) (LEU104) [view usage] : a.4.5.69 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |HxlR-like |Hypothetical protein PG0823 |Porphyromonas gingivalis [TaxId: 837]
d4ld5e_ : (THR30) (SER117) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2c6yb_ : (SER7) (GLN90) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1fp2a1 : (ILE41) (VAL104) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Isoflavone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d2qyob1 : (ASN40) (VAL109) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1ixrc1 : (GLU246) (LEU312) [view usage] : a.4.5.11 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Helicase DNA-binding domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d1t6sa2 : (VAL87) (HIS161) [view usage] : a.4.5.60 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ScpB/YpuH-like |Segregation and condensation protein B, ScpB |Chlorobium tepidum [TaxId: 1097]
d2fswb_ : (GLY21) (LEU104) [view usage] : a.4.5.69 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |HxlR-like |Hypothetical protein PG0823 |Porphyromonas gingivalis [TaxId: 837]
d4l9ta_ : (THR30) (SER106) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3ilwb_ : (PRO50) (ARG143) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3f8bb_ : (LYS6) (ASN109) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Lactococcus lactis [TaxId: 416870]
d1zgaa1 : (GLY40) (LEU110) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1stza1 : (ASN16) (THR98) [view usage] : a.4.5.51 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-inducible transcription repressor HrcA, N-terminal domain |Heat-inducible transcription repressor HrcA, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d1xmka1 : (LEU294) (GLN364) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d1fpxa1 : (ILE41) (LEU102) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Isoflavone O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4l9tb_ : (THR30) (SER106) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4gcvb_ : (GLU22) (ARG102) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1ixsb1 : (GLU246) (GLY313) [view usage] : a.4.5.11 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Helicase DNA-binding domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d4gxoa_ : (THR37) (GLU111) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 426430]
d1zg3a1 : (GLY40) (LEU110) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d1hqca1 : (GLU246) (GLY313) [view usage] : a.4.5.11 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Helicase DNA-binding domain |Holliday junction helicase RuvB |Thermus thermophilus [TaxId: 274]
d1ub9a_ : (VAL17) (ASP99) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Hypothetical protein PH1061 |Pyrococcus horikoshii [TaxId: 53953]
d2f2ea1 : (TRP25) (ALA88) [view usage] : a.4.5.69 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |HxlR-like |Hypothetical protein PA1607 |Pseudomonas aeruginosa [TaxId: 287]
d1zgja1 : (GLY40) (ILE112) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d2fnaa1 : (ARG288) (SER356) [view usage] : a.4.5.11 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Helicase DNA-binding domain |Hypothetical protein SSO1545, C-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d1stzb1 : (ASN16) (ILE94) [view usage] : a.4.5.51 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-inducible transcription repressor HrcA, N-terminal domain |Heat-inducible transcription repressor HrcA, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d3voeb_ : (THR39) (THR124) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |automated matches |Escherichia coli K-12 [TaxId: 83333]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.11, a.4