Protein Concepts Dictionary

Tableau information

Concept source:  d3axms_  amino acid (a.a.) range (GLU13)(TYR118)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HHEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLU13)   (PRO19) H1
	   (THR22)   (LYS37) H2
	   (CYS41)   (LYS46) E3
	   (THR81)   (ALA93) H4
	   (ALA97)  (ASP105) E5
	  (LEU112)  (TYR118) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
H2      152.4°   H2                                 
E3      -71.6°  134.2°   E3                          
H4      -83.9°  123.6°  -18.6°   H4                   
E5      126.9°   25.7°  152.5°  148.2°   E5            
E6      -39.2° -160.4°  -49.3°  -52.4°  157.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1wdds_ :    (GLU13)  (TYR117)   [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rice (Oryza sativa) [TaxId: 4530]
 d3axkt_ :    (GLU13)  (TYR118)   [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |automated matches |Oryza sativa [TaxId: 39947]
 d1ir1s_ :    (GLU13)  (TYR118)   [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Spinach (Spinacia oleracea) [TaxId: 3562]
 d1iwab_ :    (GLY13)  (ASN118)   [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Galdieria partita [TaxId: 83374]
 d1uzhc1 :    (GLU13)  (LEU104)   [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
 d3axms_ :    (GLU13)  (TYR118)   [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |automated matches |Oryza sativa [TaxId: 39947]
 d3axks_ :    (GLU13)  (TYR118)   [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |automated matches |Oryza sativa [TaxId: 39947]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.73