Tableau information
Concept source: d2gxba_ amino acid (a.a.) range (SER137)(ILE197)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: HEHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER137) (GLU149) H1
(GLY153) (THR157) E2
(THR157) (LYS164) H3
(LYS169) (GLY183) H4
(LEU185) (ALA189) E5
(PRO192) (ILE197) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 122.4° E2
H3 106.8° 79.1° H3
H4 -82.1° -144.9° 120.4° H4
E5 74.6° -62.6° -132.0° -107.5° E5
E6 -90.8° 139.9° 69.1° 51.7° 156.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2gxba_ : (SER137) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d2zcwa1 : (ARG117) (ASP186) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Transcriptional regulator TTHA1359, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1qbjb_ : (TYR136) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d1qbja_ : (SER134) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d2gxbb_ : (MET139) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d2acjb1 : (GLU140) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d2b0lb_ : (SER180) (LEU245) [view usage] : a.4.5.66 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CodY HTH domain |GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d1zyba1 : (LEU152) (ASP215) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Probable transcription regulator BT4300, C-terminal domain |Bacteroides thetaiotaomicron [TaxId: 818]
d3irqc_ : (GLY136) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u5tb1 : (LYS404) (VAL487) [view usage] : a.4.5.54 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Vacuolar sorting protein domain |Vacuolar protein sorting-associated protein VPS36 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1p4xa1 : (THR33) (SER97) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Staphylococcal accessory regulator A homolog, SarS |Staphylococcus aureus [TaxId: 1280]
d3f22b_ : (GLN137) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d3irra_ : (MET139) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2pg4b_ : (PHE10) (THR75) [view usage] : a.4.5.48 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F93-like |Uncharacterized protein APE0880.1 |Aeropyrum pernix [TaxId: 56636]
d3izbv_ : (GLU45) (ARG103) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2jpba_ : (GLY164) (PRO234) [view usage] : a.4.6.1 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |PhoB-like |OmpR |Escherichia coli [TaxId: 562]
d2hyec3 : (SER592) (PHE656) [view usage] : e.40.1.1 |Cullin homology domain |Cullin homology domain |Cullin homology domain |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d4i01b2 : (LEU140) (TYR207) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3f21a_ : (SER134) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d3f21b_ : (GLN137) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d1qbjc_ : (SER134) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d3irqa_ : (SER137) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ns0a1 : (SER4) (TRP81) [view usage] : a.4.5.76 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RHA1_ro06458-like |Hypothetical protein RHA1_ro06458 |Rhodococcus sp. RHA1 [TaxId: 101510]
d2pg4a1 : (PHE10) (LEU72) [view usage] : a.4.5.48 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F93-like |Uncharacterized protein APE0880.1 |Aeropyrum pernix [TaxId: 56636]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, a.4, e.40