Tableau information
Concept source: d1u2wb_ amino acid (a.a.) range (ASP41)(LEU99)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: HEHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP41) (ASP54) H1
(GLU55) (VAL59) E2
(VAL59) (LEU66) H3
(THR69) (GLY84) H4
(VAL85) (LYS90) E5
(LEU94) (LEU99) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 136.9° E2
H3 122.4° -79.0° H3
H4 -79.8° -130.4° 111.5° H4
E5 61.5° -76.4° -132.1° -115.8° E5
E6 -96.2° 126.4° 63.1° 49.7° 157.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3k9fa_ : (SER47) (LEU123) [view usage] : e.11.1.1 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |DNA Gyrase A |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2heod_ : (GLU115) (ILE168) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4mtdd_ : (THR25) (LEU87) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2hs5a1 : (SER26) (VAL89) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Putative transcriptional regulator RHA1_ro03477 |Rhodococcus sp. RHA1 [TaxId: 101510]
d2d45d1 : (SER9) (SER71) [view usage] : a.4.5.39 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Penicillinase repressor |Methicillin resistance regulatory protein MecI |Staphylococcus aureus [TaxId: 1280]
d1ucrb_ : (GLU3) (LEU65) [view usage] : a.4.5.45 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Dissimilatory sulfite reductase DsvD |Dissimilatory sulfite reductase DsvD |Desulfovibrio vulgaris [TaxId: 881]
d1o57b1 : (ARG5) (PRO73) [view usage] : a.4.5.40 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |N-terminal domain of Bacillus PurR |N-terminal domain of Bacillus PurR |Bacillus subtilis [TaxId: 1423]
d2p4wb_ : (GLU15) (ILE76) [view usage] : a.4.5.64 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PF1790-like |Transcriptional regulatory protein PF1790 |Pyrococcus furiosus [TaxId: 2261]
d2pmub_ : (SER175) (ARG244) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1ldja3 : (SER604) (LEU671) [view usage] : e.40.1.1 |Cullin homology domain |Cullin homology domain |Cullin homology domain |Cullin homolog 1, cul-1 |Human (Homo sapiens) [TaxId: 9606]
d1cf7a_ : (GLY23) (LYS82) [view usage] : a.4.5.17 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Cell cycle transcription factor e2f-dp |Cell cycle transcription factor E2F-4 |Human (Homo sapiens) [TaxId: 9606]
d1t2kb_ : (ILE8) (PHE109) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor 3, IRF-3 |Human (Homo sapiens) [TaxId: 9606]
d1qgpa_ : (LEU144) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d3raea_ : (TYR46) (LEU123) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1p6ra_ : (SER8) (PRO70) [view usage] : a.4.5.39 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Penicillinase repressor |Penicillinase repressor BlaI |Bacillus licheniformis [TaxId: 1402]
d1h9ga1 : (SER7) (PHE74) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Fatty acid responsive transcription factor FadR, N-terminal domain |Escherichia coli [TaxId: 562]
d2p4wa_ : (GLU15) (ILE76) [view usage] : a.4.5.64 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PF1790-like |Transcriptional regulatory protein PF1790 |Pyrococcus furiosus [TaxId: 2261]
d2uwma3 : (GLN575) (VAL631) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d1flia_ : (LEU283) (HIS363) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |Fli-1 |Human (Homo sapiens) [TaxId: 9606]
d2vqca1 : (ASN6) (LYS73) [view usage] : a.4.5.78 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F112-like |F-112 |Sulfolobus virus-like particle SSV1 [TaxId: 244589]
d1bbya_ : (ALA176) (LEU235) [view usage] : a.4.5.15 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DNA-binding domain from rap30 |DNA-binding domain from rap30 |Human (Homo sapiens) [TaxId: 9606]
d1wsub2 : (GLN575) (VAL631) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d3bwgc1 : (LYS3) (ARG71) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Transcriptional regulator YydK |Bacillus subtilis [TaxId: 1423]
d2o03a_ : (ALA2) (ARG75) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1e2xa1 : (SER7) (PHE74) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Fatty acid responsive transcription factor FadR, N-terminal domain |Escherichia coli [TaxId: 562]
d2jzya_ : (GLY31) (GLU100) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1sfua_ : (ASP10) (LYS71) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |34L |Yaba-like disease virus, YLDV [TaxId: 132475]
d1zelb1 : (ARG17) (PRO74) [view usage] : a.4.5.83 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Rv2827c N-terminal domain-like |Hypothetical protein Rv2827c |Mycobacterium tuberculosis [TaxId: 1773]
d4pgga1 : (GLY40) (SER104) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Sorghum (Sorghum bicolor) [TaxId: 4558]
d2dlla_ : (GLN11) (PRO114) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o57a1 : (ARG5) (PRO73) [view usage] : a.4.5.40 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |N-terminal domain of Bacillus PurR |N-terminal domain of Bacillus PurR |Bacillus subtilis [TaxId: 1423]
d1puee_ : (ARG173) (SER255) [view usage] : a.4.5.21 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ets domain |Transcription factor PU.1, residues 171-259 |Mouse (Mus musculus) [TaxId: 10090]
d1biaa1 : (THR5) (GLU62) [view usage] : a.4.5.1 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Biotin repressor-like |Biotin repressor, N-terminal domain |Escherichia coli [TaxId: 562]
d2l54a_ : (GLN7) (ALA68) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3f21c_ : (SER134) (ILE197) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 |Human (Homo sapiens) [TaxId: 9606]
d1u5ta1 : (ASP82) (VAL161) [view usage] : a.4.5.54 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Vacuolar sorting protein domain |Vacuolar sorting protein SNF8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1biba1 : (THR5) (PRO61) [view usage] : a.4.5.1 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Biotin repressor-like |Biotin repressor, N-terminal domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.11, a.4, e.40