Tableau information
Concept source: d1n7ka_ amino acid (a.a.) range (PRO116)(SER199)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: HEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO116) (GLY134) H1
(VAL136) (GLU142) E2
(ASP148) (GLY162) H3
(ASP164) (THR168) E4
(ASP178) (GLY193) H5
(GLY195) (SER199) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 155.2° E2
H3 -34.6° 162.3° H3
E4 129.7° -25.6° 156.5° E4
H5 -70.2° 134.6° -42.7° 159.7° H5
E6 105.6° -51.2° 125.4° -31.1° 162.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2nw0a_ : (VAL40) (VAL122) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Unidentified phage [TaxId: 38018]
d1k1xa3 : (LYS62) (VAL144) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d1ynya2 : (LYS102) (HIS183) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |D-hydantoinase |Bacillus sp. AR9 [TaxId: 301298]
d1vd6a_ : (LEU82) (ALA152) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1yuba_ : (SER14) (GLN82) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |rRNA adenine dimethylase |Streptococcus pneumoniae, Ermam [TaxId: 1313]
d2ckra_ : (THR168) (ALA261) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermobifida fusca [TaxId: 2021]
d4r9oc_ : (ASP102) (GLU182) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Salmonella enterica [TaxId: 99287]
d1jfxa_ : (SER71) (TRP165) [view usage] : c.1.8.8 |TIM beta/alpha-barrel |(Trans)glycosidases |1,4-beta-N-acetylmuraminidase |Streptomyces lysozyme |Streptomyces coelicolor, "mueller" dsm3030 [TaxId: 1902]
d2b5dx2 : (LEU125) (ASP207) [view usage] : c.6.2.4 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |AmyC N-terminal domain-like |Alpha-amylase AmyC |Thermotoga maritima [TaxId: 2336]
d2j62a2 : (PHE318) (TYR397) [view usage] : c.1.8.10 |TIM beta/alpha-barrel |(Trans)glycosidases |alpha-D-glucuronidase/Hyaluronidase catalytic domain |Hyaluronidase catalytic domain |Clostridium perfringens [TaxId: 1502]
d4r9oa_ : (ASP102) (GLU182) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Salmonella enterica [TaxId: 99287]
d4jxxa1 : (ASN9) (SER99) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d1lqaa_ : (ARG107) (ASN206) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Tas protein |Escherichia coli [TaxId: 562]
d1og6a_ : (ASP102) (GLU182) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Hypothetical oxidoreductase YdhF |Escherichia coli [TaxId: 562]
d4eria_ : (ALA109) (PRO178) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d1kcxa2 : (LEU116) (HIS198) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |Dihydropyrimidinase related protein-1 |Mouse (Mus musculus) [TaxId: 10090]
d3s6oc_ : (HIS110) (ASP188) [view usage] : c.6.2.6 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |PA1517-like |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1ur3m_ : (ASP102) (GLU182) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Hypothetical oxidoreductase YdhF |Escherichia coli [TaxId: 562]
d1f12a2 : (ALA95) (PHE160) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Short chain L-3-hydroxyacyl CoA dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
d4dyda1 : (ASP78) (ALA145) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Acinetobacter baylyi [TaxId: 202950]
d1qrsa2 : (ASN9) (SER99) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d3hmca_ : (TYR44) (GLY126) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1tmla_ : (GLN127) (ASP218) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Cellulase E2 |Thermobifida fusca YX [TaxId: 269800]
d1hyqa_ : (GLU123) (GLU198) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Cell division regulator MinD |Archaeoglobus fulgidus [TaxId: 2234]
d2plaa1 : (ASN80) (GLY151) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1p31a3 : (ALA179) (GLY250) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d1iq8a1 : (SER110) (ILE194) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Archaeosine tRNA-guanine transglycosylase, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d2g8lb_ : (SER138) (GLY212) [view usage] : e.50.1.1 |AF1104-like |AF1104-like |AF1104-like |Hypothetical protein PH1575 |Pyrococcus horikoshii [TaxId: 53953]
d1gqyb3 : (ALA179) (GLY250) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Haemophilus influenzae [TaxId: 727]
d3ro6a2 : (PRO247) (ASP321) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Methylococcus capsulatus [TaxId: 414]
d1k1xb3 : (LEU66) (ASP145) [view usage] : c.6.2.2 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |4-alpha-glucanotransferase, N-terminal domain |4-alpha-glucanotransferase, N-terminal domain |Thermococcus litoralis [TaxId: 2265]
d4iqda_ : (LEU171) (VAL241) [view usage] : c.1.12.0 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1tyfa_ : (ASP18) (GLY93) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |Clp protease, ClpP subunit |Escherichia coli [TaxId: 562]
d2afio_ : (MET137) (ARG213) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3nv8a_ : (ARG322) (GLU415) [view usage] : c.1.10.8 |TIM beta/alpha-barrel |Aldolase |Class-II DAHP synthetase |Probable DAHP synthetase AroG, phenylalanine-repressible |Mycobacterium tuberculosis [TaxId: 1773]
d4ifka_ : (ALA90) (PRO178) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d3thab_ : (PRO150) (GLY224) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d3w02b_ : (SER20) (VAL84) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Staphylococcus aureus [TaxId: 418127]
d3hg3a1 : (ILE117) (GLU203) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Melibiase |Human (Homo sapiens) [TaxId: 9606]
d2cksa_ : (THR168) (ALA261) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermobifida fusca [TaxId: 2021]
d1qrua2 : (ASN9) (SER99) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d3reqb1 : (ASP117) (GLY198) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase beta subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d2cksb_ : (THR168) (ALA261) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermobifida fusca [TaxId: 2021]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.6, c.26, c.66, c.14, c.72, c.37, e.50