Tableau information
Concept source: d3orhd_ amino acid (a.a.) range (THR47)(LYS114)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: HEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR47) (SER59) H1
(GLY62) (GLY68) E2
(ALA72) (PRO82) H3
(ASP84) (GLU90) E4
(ASN92) (GLN106) H5
(LYS109) (LYS114) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 142.6° E2
H3 -41.5° -175.7° H3
E4 128.2° -14.4° 169.7° E4
H5 -62.1° 152.6° -23.1° -164.1° H5
E6 115.2° -27.5° 156.7° -13.2° -169.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4p31a_ : (SER139) (SER211) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1vmia_ : (ASP-5) (ASP69) [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Ethanolamine utilization protein EutD |Escherichia coli [TaxId: 562]
d1t43a_ : (ARG92) (LEU164) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Escherichia coli [TaxId: 562]
d1itqa_ : (SER177) (PHE251) [view usage] : c.1.9.7 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Renal dipeptidase |Renal dipeptidase |Human (Homo sapiens) [TaxId: 9606]
d1byka_ : (ASN224) (GLY283) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Trehalose repressor, C-terminal domain |Escherichia coli [TaxId: 562]
d1gz3a1 : (THR376) (GLY446) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d1c3pa_ : (GLY108) (LEU190) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |HDAC homologue |Aquifex aeolicus [TaxId: 63363]
d3tqsa_ : (SER18) (GLN84) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d2b34a_ : (GLU95) (THR160) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2fm4a_ : (THR410) (GLY470) [view usage] : c.8.1.1 |The "swivelling" beta/beta/alpha domain |Phosphohistidine domain |Pyruvate phosphate dikinase, central domain |Pyruvate phosphate dikinase, central domain |Clostridium symbiosum [TaxId: 1512]
d3evga_ : (ARG57) (GLY129) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |Dengue virus 2 16681-pdk53 [TaxId: 31635]
d3cufa_ : (TYR149) (ILE231) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Cellulomonas fimi [TaxId: 1708]
d1qyra_ : (GLN23) (GLN90) [view usage] : c.66.1.24 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA adenine dimethylase-like |High level kasugamycin resistance protein KsgA |Escherichia coli [TaxId: 562]
d1t64a_ : (GLY107) (LEU200) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |Histone deacetylase 8, HDAC8 |Human (Homo sapiens) [TaxId: 9606]
d1mu7b1 : (HIS184) (GLN252) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d2hk7a2 : (ASP106) (SER173) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Aquifex aeolicus [TaxId: 63363]
d1c3ra_ : (TYR97) (LEU190) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |HDAC homologue |Aquifex aeolicus [TaxId: 63363]
d1nf8a_ : (ASP132) (THR201) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Phenazine biosynthesis protein PhzD |Pseudomonas aeruginosa [TaxId: 287]
d1fcda2 : (GLU132) (PRO221) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit |Chromatium vinosum [TaxId: 1049]
d2r7ka1 : (SER3) (ASP68) [view usage] : c.30.1.8 |PreATP-grasp domain |PreATP-grasp domain |PurP N-terminal domain-like |5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP |Methanocaldococcus jannaschii [TaxId: 2190]
d3pzla_ : (GLU97) (GLY180) [view usage] : c.42.1.0 |Arginase/deacetylase |Arginase/deacetylase |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
d2dlda1 : (LEU193) (ASP260) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |D-lactate dehydrogenase |Lactobacillus helveticus [TaxId: 1587]
d3vbae_ : (PHE47) (LYS108) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2hk8f2 : (ASP106) (SER173) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Aquifex aeolicus [TaxId: 63363]
d2otda_ : (GLU178) (ASP235) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Shigella flexneri [TaxId: 623]
d1zcza2 : (GLY388) (PRO446) [view usage] : c.97.1.4 |Cytidine deaminase-like |Cytidine deaminase-like |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC |Thermotoga maritima [TaxId: 2336]
d2g0tb_ : (VAL70) (ILE138) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Hypothetical protein TM0796 |Thermotoga maritima [TaxId: 2336]
d3anxb_ : (PRO70) (ILE138) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1v7la_ : (PHE38) (GLY105) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Isopropylmalate isomerase LeuD |Pyrococcus horikoshii [TaxId: 53953]
d1hdoa_ : (ALA59) (PRO151) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Biliverdin IX beta reductase |Human (Homo sapiens) [TaxId: 9606]
d1e0ta3 : (ILE354) (LEU419) [view usage] : c.49.1.1 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |Pyruvate kinase, C-terminal domain |Pyruvate kinase, C-terminal domain |Escherichia coli [TaxId: 562]
d1g21e_ : (ALA98) (SER186) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3t4ea2 : (ASP107) (ASP183) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |automated matches |Salmonella enterica [TaxId: 90371]
d3vbac_ : (ASP46) (LYS108) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d3gfoa_ : (SER143) (LYS216) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Clostridium perfringens [TaxId: 195103]
d1t57a_ : (THR16) (GLY91) [view usage] : c.49.1.2 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |MTH1675-like |Hypothetical protein MTH1675 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1xdoa3 : (GLU351) (SER428) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Escherichia coli [TaxId: 562]
d4qa0b_ : (GLY107) (LEU200) [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3d2la_ : (GLU21) (VAL84) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Exiguobacterium sibiricum [TaxId: 262543]
d1q1ra2 : (THR135) (GLY211) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Putidaredoxin reductase |Pseudomonas putida [TaxId: 303]
d1oi7a1 : (THR55) (GLY120) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain |Thermus thermophilus [TaxId: 274]
d3vbad_ : (ASP46) (LYS108) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1yaca_ : (ASN93) (TRP165) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |YcaC |Escherichia coli [TaxId: 562]
d1khha_ : (GLU45) (LYS113) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1q19a1 : (LEU234) (ILE296) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |beta-Lactam synthetase |Pectobacterium carotovorum [TaxId: 554]
d1bxga1 : (ALA150) (ALA223) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Phenylalanine dehydrogenase |Rhodococcus sp., M4 [TaxId: 1831]
d1dxya1 : (SER190) (ASP258) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |D-2-hydroxyisocaproate dehydrogenase |Lactobacillus casei [TaxId: 1582]
d1b1ya_ : (LEU317) (ARG418) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |beta-Amylase |Barley (Hordeum vulgare) [TaxId: 4513]
d3lbfa_ : (PRO61) (HIS129) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2egga2 : (ASP123) (SER194) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Geobacillus kaustophilus [TaxId: 1462]
d1cqia1 : (THR55) (GLY120) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain |Escherichia coli [TaxId: 562]
d3tnla2 : (ASP113) (ASP189) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Listeria monocytogenes [TaxId: 169963]
d1ejja1 : (THR96) (THR181) [view usage] : c.105.1.1 |2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain |2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain |2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain |2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain |Bacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.26, c.66, c.77, c.93, c.42, c.37, c.97, c.8, c.33, c.49, c.3, c.30, d.136, c.105