Tableau information
Concept source: d3eb2d_ amino acid (a.a.) range (THR147)(GLY208)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: HEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR147) (ALA155) H1
(ARG161) (ALA166) E2
(GLY171) (GLY181) H3
(GLN185) (SER190) E4
(PRO194) (GLY201) H5
(VAL203) (GLY208) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 147.1° E2
H3 -40.3° 172.7° H3
E4 132.7° -14.7° 172.2° E4
H5 -60.0° 150.8° -23.0° 164.6° H5
E6 111.4° -45.6° 138.4° -35.5° 157.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1q2ra_ : (PHE207) (CYS281) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 542]
d1viwa2 : (SER160) (PHE245) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
d3o94b_ : (ASP113) (ASP183) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d3ve7a_ : (LYS39) (SER106) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Metallosphaera sedula [TaxId: 399549]
d2je8a5 : (THR373) (ASN460) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Five-domain beta-mannosidase, domain 3 |Bacteroides thetaiotaomicron [TaxId: 818]
d1leha1 : (PRO148) (ALA222) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Leucine dehydrogenase |Bacillus sphaericus [TaxId: 1421]
d1keva2 : (PRO141) (TYR218) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |Bacterial secondary alcohol dehydrogenase |Clostridium beijerinckii [TaxId: 1520]
d3uvia_ : (GLU208) (SER281) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 542]
d2goka2 : (THR206) (GLU281) [view usage] : c.1.9.17 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Imidazolonepropionase-like |Imidazolonepropionase |Agrobacterium tumefaciens [TaxId: 358]
d2cvpa_ : (GLY189) (TRP267) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d6cgta4 : (ASN204) (PHE283) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d4e4ya_ : (GLN53) (GLY168) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d3w01a_ : (THR139) (GLY209) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Staphylococcus aureus [TaxId: 418127]
d1nv8a_ : (ARG103) (LYS177) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Thermotoga maritima [TaxId: 2336]
d1h0ka2 : (ASN172) (THR244) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |2,4-dienoyl-CoA reductase |Yeast (Candida tropicalis) [TaxId: 5482]
d1c8qa2 : (LYS172) (PHE256) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Animal alpha-amylase |Human (Homo sapiens) [TaxId: 9606]
d3vpxa2 : (PRO146) (GLY222) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sporosarcina psychrophila [TaxId: 1476]
d2rkba_ : (GLY51) (THR116) [view usage] : c.79.1.0 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qwka_ : (PRO130) (ALA202) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Hypothetical protein C07D8.6 |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3rdkb_ : (GLY28) (VAL136) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d1knwa2 : (GLN106) (ILE192) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Escherichia coli [TaxId: 562]
d1zkpd_ : (GLY38) (ASN115) [view usage] : d.157.1.9 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |YhfI-like |Hypothetical protein BA1088 (BAS1016) |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1gu7a2 : (ASN172) (THR244) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |2,4-dienoyl-CoA reductase |Yeast (Candida tropicalis) [TaxId: 5482]
d1losc_ : (ALA2139) (ALA2203) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1j6oa_ : (PHE72) (ALA152) [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Hypothetical protein TM0667 |Thermotoga maritima [TaxId: 2336]
d1g3qa_ : (LEU125) (GLU199) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Cell division regulator MinD |Pyrococcus furiosus [TaxId: 2261]
d1shtx_ : (ILE120) (LYS200) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Capillary morphogenesis protein 2 domain |Human (Homo sapiens) [TaxId: 9606]
d3ovqa_ : (HIS51) (LYS120) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zkpc_ : (GLY38) (ASN115) [view usage] : d.157.1.9 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |YhfI-like |Hypothetical protein BA1088 (BAS1016) |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3o90b_ : (ASP113) (ASP183) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d2dvta1 : (THR42) (ASN128) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Thermophilic reversible gamma-resorcylate decarboxylase |Rhizobium sp. MTP-10005 [TaxId: 267998]
d1twia2 : (ILE202) (GLY306) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Methanococcus jannaschii [TaxId: 2190]
d2bb0a2 : (PRO207) (VAL274) [view usage] : c.1.9.17 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Imidazolonepropionase-like |Imidazolonepropionase |Bacillus subtilis [TaxId: 1423]
d1cgua4 : (ALA205) (PHE283) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d2vqua5 : (THR373) (ASN460) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Five-domain beta-mannosidase, domain 3 |Bacteroides thetaiotaomicron [TaxId: 818]
d1sg9a_ : (THR106) (LYS177) [view usage] : c.66.1.30 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N5-glutamine methyltransferase, HemK |N5-glutamine methyltransferase, HemK |Thermotoga maritima [TaxId: 2336]
d1efza_ : (GLU208) (CYS281) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 542]
d3cgta4 : (ALA205) (PHE283) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d3up8a_ : (LEU30) (LEU104) [view usage] : c.1.7.0 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3o94a_ : (ASP113) (ASP183) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
d1zkpa1 : (GLY38) (ASN115) [view usage] : d.157.1.9 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |YhfI-like |Hypothetical protein BA1088 (BAS1016) |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1zkpa1 : (ILE159) (LEU235) [view usage] : d.157.1.9 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |YhfI-like |Hypothetical protein BA1088 (BAS1016) |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2p4qa1 : (ILE57) (GLY129) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2dvtb_ : (THR42) (ASN128) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Thermophilic reversible gamma-resorcylate decarboxylase |Rhizobium sp. MTP-10005 [TaxId: 267998]
d2fjka_ : (THR61) (GLY134) [view usage] : c.1.10.2 |TIM beta/alpha-barrel |Aldolase |Class II FBP aldolase |automated matches |Thermus caldophilus [TaxId: 272]
d2hk8a2 : (ASP106) (SER173) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Aquifex aeolicus [TaxId: 63363]
d1jqba2 : (PRO1141) (LYS1219) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |Bacterial secondary alcohol dehydrogenase |Clostridium beijerinckii [TaxId: 1520]
d3zs4a_ : (TRP153) (LYS227) [view usage] : c.1.2.1 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Histidine biosynthesis enzymes |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1p5ja_ : (ARG43) (GLY110) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |L-serine dehydratase |Human (Homo sapiens) [TaxId: 9606]
d1h7xa2 : (ASN646) (THR735) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydropyrimidine dehydrogenase, domain 4 |Pig (Sus scrofa) [TaxId: 9823]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.79, d.157, c.66, c.80, c.37, c.62, c.33