Protein Concepts Dictionary

Tableau information

Concept source:  d1h1nb_  amino acid (a.a.) range (ASP33)(THR130)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP33)   (GLY44) H1
	   (ASN46)   (PHE52) E2
	   (ASN69)   (GLY85) H3
	   (ALA86)   (PRO92) E4
	  (SER105)  (ALA121) H5
	  (LEU125)  (THR130) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
E2      149.3°   E2                                 
H3      -25.2° -174.3°   H3                          
E4      128.4°  -20.9° -153.5°   E4                   
H5      -79.7°  131.0°  -54.6°  151.9°   H5            
E6      110.3°  -39.4°  134.9°  -19.1°  168.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1e5ja_ :    (GLU47)  (ALA137)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase Cel5a |Bacillus agaradhaerens [TaxId: 76935]
 d3f4ne_ :    (THR22)   (PRO95)   [view usage] : c.1.24.1 |TIM beta/alpha-barrel |Pyridoxine 5'-phosphate synthase |Pyridoxine 5'-phosphate synthase |automated matches |Yersinia pestis [TaxId: 632]
 d1i0bb_ :   (SER142)  (HIS230)   [view usage] : c.1.9.3 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Phosphotriesterase-like |Phosphotriesterase (parathion hydrolase, PTE) |Pseudomonas diminuta [TaxId: 293]
 d2gjxa1 :   (PHE348)  (SER417)   [view usage] : c.1.8.6 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-N-acetylhexosaminidase catalytic domain |beta-hexosaminidase A |Human (Homo sapiens) [TaxId: 9606]
 d4e3ta_ :   (SER142)  (HIS230)   [view usage] : c.1.9.3 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Phosphotriesterase-like |automated matches |Brevundimonas diminuta [TaxId: 293]
 d1h1na_ :    (ASP33)  (THR130)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase EngI |Thermoascus aurantiacus [TaxId: 5087]
 d4tx6b_ :   (SER133)  (ILE229)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
 d3f4na_ :    (PRO27)   (PRO95)   [view usage] : c.1.24.1 |TIM beta/alpha-barrel |Pyridoxine 5'-phosphate synthase |Pyridoxine 5'-phosphate synthase |automated matches |Yersinia pestis [TaxId: 632]
 d2xtka_ :   (SER133)  (ILE229)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
 d1v93a_ :   (ALA128)  (MET209)   [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Thermus thermophilus [TaxId: 274]
 d1g7ua_ :   (GLN103)  (GLY173)   [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) |Escherichia coli [TaxId: 562]
 d1ydfa1 :    (ALA96)  (GLY181)   [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Putative hydrolase SP1407 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
 d1aoda_ :    (SER69)  (SER176)   [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Listeria monocytogenes [TaxId: 1639]
 d2xtkb_ :   (SER133)  (ILE229)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
 d3euca_ :   (ASP144)  (THR223)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Ralstonia eutropha [TaxId: 264198]
 d3apya_ :   (ALA128)  (MET209)   [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d1twia2 :   (SER105)  (ASN174)   [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Methanococcus jannaschii [TaxId: 2190]
 d2feaa1 :   (LYS151)  (GLN205)   [view usage] : c.108.1.20 |HAD-like |HAD-like |MtnX-like |2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX |Bacillus subtilis [TaxId: 1423]
 d1h1nb_ :    (ASP33)  (THR130)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endocellulase EngI |Thermoascus aurantiacus [TaxId: 5087]
 d3pztb_ :    (ASP77)  (ALA167)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
 d1ntha_ :   (ILE271)  (ALA368)   [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
 d1xgda_ :    (PRO23)  (ILE109)   [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1,    c.67,   c.108