Protein Concepts Dictionary

Tableau information

Concept source:  d1f4pa_  amino acid (a.a.) range (SER77)(ALA147)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER77)   (GLY82) H1
	   (LYS87)   (CYS93) E2
	  (GLY103)  (GLY116) H3
	  (GLY116)  (GLN121) E4
	  (GLY123)  (GLY128) E5
	  (ARG134)  (ALA147) H6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
E2      139.2°   E2                                 
H3      -53.4°  166.1°   H3                          
E4       90.8°  -55.6° -138.0°   E4                   
E5      123.8°  -16.2°  167.7°   48.9°   E5            
H6      -50.6°  170.2°   -7.3°  131.4° -172.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1akra_ :    (SER77)  (ILE148)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1f4pa_ :    (SER77)  (ALA147)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1bu5a_ :    (SER77)  (ILE148)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1akqa_ :    (SER77)  (ILE148)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1qo0b_ :   (ALA129)  (ARG197)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
 d1qnla_ :   (ALA123)  (ALA196)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
 d1qo0a_ :   (ALA129)  (ARG197)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
 d1akta_ :    (SER77)  (ILE148)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1peaa_ :   (PRO124)  (ARG197)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Amide receptor/negative regulator of the amidase operon (AmiC) |Pseudomonas aeruginosa [TaxId: 287]
 d1j9ea_ :    (SER77)  (ARG134)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d3nlla_ :    (ILE73)  (ASN137)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Clostridium beijerinckii [TaxId: 1520]
 d1azla_ :    (SER77)  (ILE148)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
 d1akwa_ :    (SER77)  (ILE148)   [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.93,    c.23