Protein Concepts Dictionary

Tableau information

Concept source:  d2gp5a_  amino acid (a.a.) range (TYR59)(GLY133)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HEEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR59)   (LEU65) H1
	   (PRO68)   (GLY77) E2
	   (THR83)   (GLN88) E3
	   (THR93)  (SER103) H4
	  (PHE114)  (LYS123) H5
	  (ASN128)  (GLY133) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
E2      -83.3°   E2                                 
E3       79.8°  156.2°   E3                          
H4       98.1°  -28.5°  139.2°   H4                   
H5        4.3°  -81.1°   83.0°   97.6°   H5            
E6      105.8°  147.3°  -55.0° -155.0° -105.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2vd7a_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2xmla_ :    (TYR61)  (GLY135)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ai9a_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2vd7b_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d3rvha_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2gp3a_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2wwja_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d3pdqb_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2gp3b_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2gp5a_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d3rvhb_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2gp5b_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]
 d2oq7b_ :    (TYR59)  (GLY133)   [view usage] : b.82.2.14 |Double-stranded beta-helix |Clavaminate synthase-like |Histone demethylase core |JMJD2A core |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82