Protein Concepts Dictionary

Tableau information

Concept source:  d3oj7a_  amino acid (a.a.) range (PHE7)(GLU76)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: HEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PHE7)   (LYS13) H1
	   (VAL20)   (ASP24) E2
	   (GLU25)   (LYS30) E3
	   (HIS39)   (PRO44) E4
	   (THR55)   (GLU59) H5
	   (GLU59)   (GLU76) H6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                        
E2      -90.0°   E2                                 
E3       95.5° -168.6°   E3                          
E4      -90.7°   -4.0°  164.7°   E4                   
H5       32.0°  108.3°  -81.2°  110.7°   H5            
H6       60.3°  150.1°  -37.4°  151.0°  -44.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1st0a1 :   (GLN174)  (LEU245)   [view usage] : d.13.1.3 |HIT-like |HIT-like |mRNA decapping enzyme DcpS C-terminal domain |mRNA decapping enzyme DcpS C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d3bl7a1 :   (GLN174)  (LEU245)   [view usage] : d.13.1.3 |HIT-like |HIT-like |mRNA decapping enzyme DcpS C-terminal domain |mRNA decapping enzyme DcpS C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d1st0b1 :   (GLN174)  (LEU245)   [view usage] : d.13.1.3 |HIT-like |HIT-like |mRNA decapping enzyme DcpS C-terminal domain |mRNA decapping enzyme DcpS C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
 d1xqua_ :     (CYS7)   (GLY79)   [view usage] : d.13.1.1 |HIT-like |HIT-like |HIT (HINT, histidine triad) family of protein kinase-interacting proteins |Putative hydrolase |Clostridium thermocellum [TaxId: 1515]
 d3n1sb_ :     (PHE7)   (GLU76)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d1xmmd1 :   (GLN174)  (ARG255)   [view usage] : d.13.1.3 |HIT-like |HIT-like |mRNA decapping enzyme DcpS C-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3oj7a_ :     (PHE7)   (GLU76)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
 d3omfa_ :     (CYS5)   (GLY73)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]
 d3oxka_ :     (CYS5)   (GLY73)   [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Entamoeba histolytica [TaxId: 294381]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.13