Tableau information
Concept source: d1smvc_ amino acid (a.a.) range (GLY97)(GLN160)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: HEEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY97) (SER108) H1
(SER108) (TRP112) E2
(LEU113) (CYS123) E3
(SER130) (ASP138) E4
(SER146) (SER151) H5
(ARG154) (GLN160) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 130.9° E2
E3 -165.6° -63.3° E3
E4 -14.4° -129.8° 157.8° E4
H5 48.8° -91.6° -142.4° 59.8° H5
E6 162.3° 63.2° -14.0° 166.0° -130.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vb2a_ : (GLY105) (GLN168) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d1c8nc_ : (PRO119) (PRO182) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d1smvc_ : (GLY97) (GLN160) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SMV (Sesbania mosaic virus) [TaxId: 12558]
d4sbvc_ : (GLY97) (PRO160) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |SBMV (Southern bean mosaic virus), cow pea strain [TaxId: 12139]
d4pdwa_ : (LEU112) (LYS179) [view usage] : b.121.4.1 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Picornaviridae-like VP (VP1, VP2, VP3 and VP4) |automated matches |Human rhinovirus 14 [TaxId: 12131]
d1opoc_ : (PHE117) (ALA180) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Carmovirus coat protein |CarMV (Carnation mottle virus) [TaxId: 11986]
d1ddla_ : (THR61) (CYS117) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |Tymovirus coat protein |DYMV (Desmodium yellow mottle tymovirus) [TaxId: 70821]
d1f2nc_ : (PRO86) (SER148) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |RYMV (Rice yellow mottle virus) [TaxId: 31744]
d2fz1a_ : (ILE56) (CYS117) [view usage] : b.121.4.6 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tymoviridae-like VP |automated matches |Turnip yellow mosaic virus [TaxId: 12155]
d1opoa_ : (PHE117) (ALA180) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Carmovirus coat protein |CarMV (Carnation mottle virus) [TaxId: 11986]
d1c8na_ : (PRO119) (PRO182) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d1f15a_ : (PRO93) (GLN154) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |CMV (Cucumber mosaic virus), strain fny [TaxId: 12305]
d1f2na_ : (PRO86) (SER148) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Sobemovirus coat protein |RYMV (Rice yellow mottle virus) [TaxId: 31744]
d1x36a_ : (GLY105) (GLN168) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |automated matches |SMV (Sesbania mosaic virus) [TaxId: 12558]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.121