Tableau information
Concept source: d2nyva_ amino acid (a.a.) range (ASP127)(TRP184)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EHHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP127) (GLY131) E1
(GLY131) (GLY136) H2
(PRO142) (GLY153) H3
(ALA159) (GLY163) E4
(ASP166) (GLY176) H5
(LYS178) (TRP184) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 -84.8° H2
H3 156.7° 82.0° H3
E4 -44.9° -128.8° 139.5° E4
H5 118.2° 36.9° -57.2° 162.6° H5
E6 -69.8° -148.3° 114.4° -25.8° 171.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3il7a2 : (ILE176) (VAL263) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d4erha_ : (LYS217) (GLU306) [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Salmonella enterica [TaxId: 588858]
d3p13b_ : (ARG40) (PRO100) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d3op1a1 : (GLU91) (PRO153) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2nvua_ : (VAL100) (THR155) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d4n44a1 : (SER8) (LYS86) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Clostridium acetobutylicum [TaxId: 863638]
d1evka2 : (GLY378) (GLY457) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Escherichia coli [TaxId: 562]
d1ml4a1 : (GLY70) (GLY129) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Pyrococcus abyssi [TaxId: 29292]
d3wc4a_ : (ARG60) (PRO136) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Clitoria ternatea [TaxId: 43366]
d2o2xa1 : (GLY108) (VAL180) [view usage] : c.108.1.19 |HAD-like |HAD-like |Histidinol phosphatase-like |Hypothetical protein Mll2559 |Mesorhizobium loti [TaxId: 381]
d1do8a1 : (LYS340) (LEU419) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d1s1ie_ : (LEU75) (PRO174) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2id2a_ : (VAL202) (GLU250) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d3umgb_ : (ASP157) (LEU213) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d2wtxa_ : (ASN59) (LEU153) [view usage] : c.87.1.6 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Trehalose-6-phosphate synthase, OtsA |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4o9ca1 : (VAL7) (ASN85) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d3idha1 : (THR103) (ASN204) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4o99a1 : (SER8) (LYS86) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d3umgg_ : (ASP157) (LEU213) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
d2nyva_ : (ASP127) (TRP184) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d3p12a_ : (ARG40) (ILE99) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d2id2c_ : (VAL202) (GLU261) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Streptococcus mutans [TaxId: 1309]
d3hbja_ : (LYS70) (THR146) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d3k1za_ : (ASP155) (GLY213) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.2, i.1, c.108, c.82, c.26, d.104, c.55, c.95, c.87, c.78, c.111, c.133, d.79