Tableau information
Concept source: d1vlwa_ amino acid (a.a.) range (LYS11)(ALA67)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EHEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS11) (ARG17) E1
(SER20) (GLY35) H2
(HIS37) (PHE43) E3
(ASP47) (LEU55) H4
(LEU55) (GLY62) H5
(GLY62) (ALA67) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 162.1° H2
E3 -29.8° 161.8° E3
H4 133.9° -39.7° 157.9° H4
H5 178.2° 16.1° -151.4° -45.5° H5
E6 -47.6° 141.6° -20.2° -173.0° -133.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1g64b_ : (ILE230) (MET287) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |ATP:corrinoid adenosyltransferase CobA |Salmonella typhimurium [TaxId: 90371]
d3dv2a_ : (LYS3) (GLU75) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1vlwa_ : (LYS11) (ALA67) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |KDPG aldolase |Thermotoga maritima [TaxId: 2336]
d4e4ga_ : (GLY139) (GLY202) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d3c3ya_ : (LYS73) (SER129) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |automated matches |Mesembryanthemum crystallinum [TaxId: 3544]
d1g5ta_ : (ILE30) (MET87) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |ATP:corrinoid adenosyltransferase CobA |Salmonella typhimurium [TaxId: 90371]
d1wbhb_ : (PRO16) (THR73) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |KDPG aldolase |Escherichia coli [TaxId: 562]
d3wc4a_ : (SER265) (SER324) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Clitoria ternatea [TaxId: 43366]
d1mfza2 : (MSE1) (THR68) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |GDP-mannose 6-dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d1mfza2 : (VAL84) (PHE158) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |GDP-mannose 6-dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d1g5ra_ : (ILE30) (MSE87) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |ATP:corrinoid adenosyltransferase CobA |Salmonella typhimurium [TaxId: 90371]
d1g97a2 : (SER2) (GLU74) [view usage] : c.68.1.5 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |UDP-glucose pyrophosphorylase |N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3c3kb_ : (ARG40) (ALA93) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1ldma1 : (ASN21) (LYS81) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Dogfish (Squalus acanthias) [TaxId: 7797]
d1f8ia_ : (ALA148) (ASP230) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Mycobacterium tuberculosis [TaxId: 1773]
d4lzla_ : (ARG28) (ASP81) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 914130]
d1wa3d_ : (LYS11) (ALA67) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Thermotoga maritima [TaxId: 2336]
d1vb3a1 : (GLN240) (ASP332) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Escherichia coli [TaxId: 562]
d3aala_ : (PRO111) (ASP179) [view usage] : c.1.15.1 |TIM beta/alpha-barrel |Xylose isomerase-like |Endonuclease IV |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d1umba_ : (ASN138) (ALA201) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Branched-chain alpha-keto acid dehydrogenase, PP module |Thermus thermophilus [TaxId: 274]
d1uima_ : (HIS180) (ALA265) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Thermus thermophilus [TaxId: 274]
d4hhpb_ : (GLN6) (ALA65) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1uina_ : (ALA79) (GLU131) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Thermus thermophilus [TaxId: 274]
d1mv8a2 : (MET1) (THR68) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |GDP-mannose 6-dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d2i5ia1 : (LYS4) (LEU66) [view usage] : c.6.2.8 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |YdjC-like |Uncharacterized protein EF3048 |Enterococcus faecalis [TaxId: 1351]
d2g3wb_ : (ASP79) (GLU133) [view usage] : c.52.1.33 |Restriction endonuclease-like |Restriction endonuclease-like |YaeQ-like |Hypothetical protein XAC2396 |Xanthomonas axonopodis pv. citri [TaxId: 92829]
d1jy1a1 : (VAL197) (GLN252) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d1tpea_ : (GLN5) (ALA64) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4rk5a_ : (LEU215) (ASP277) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Lactobacillus casei [TaxId: 321967]
d2p4qa1 : (PHE5) (THR55) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2vjya3 : (ASN403) (ASN471) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.6, c.68, c.79, c.82, c.26, c.66, c.93, c.23, c.37, c.36, c.87, c.52, d.136