Protein Concepts Dictionary

Tableau information

Concept source:  d2caja2  amino acid (a.a.) range (ALA66)(LYS140)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: EHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA66)   (ILE71) E1
	   (GLU78)   (SER90) H2
	   (LEU95)  (HIS101) E3
	  (HIS105)  (GLN114) E4
	  (ASN116)  (LEU130) H5
	  (LYS134)  (LYS140) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                        
H2      159.8°   H2                                 
E3      -19.4°  157.7°   E3                          
E4      172.9°  -18.2°  167.6°   E4                   
H5       -3.3°  158.8°  -22.6°  169.7°   H5            
E6      164.2°  -31.1°  145.0°  -22.8°  167.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.8°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ulra_ :     (PRO2)   (TRP76)   [view usage] : d.58.10.1 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |Acylphosphatase-like |Acylphosphatase |Thermus thermophilus [TaxId: 274]
 d1qd1a1 :     (SER2)   (PRO95)   [view usage] : d.58.34.1 |Ferredoxin-like |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Formiminotransferase domain of formiminotransferase-cyclodeaminase. |Pig (Sus scrofa) [TaxId: 9823]
 d2bvza1 :     (TYR4)   (LYS92)   [view usage] : d.58.14.1 |Ferredoxin-like |Ribosomal protein S6 |Ribosomal protein S6 |Ribosomal protein S6 |Thermus thermophilus [TaxId: 274]
 d1sc6a3 :   (ARG338)  (TYR410)   [view usage] : d.58.18.1 |Ferredoxin-like |ACT-like |Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain |Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain |Escherichia coli [TaxId: 562]
 d3qsic_ :    (ALA66)  (LYS140)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 563041]
 d2ca9b2 :    (ALA66)  (SER143)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d1loua_ :     (TYR4)   (LYS92)   [view usage] : d.58.14.1 |Ferredoxin-like |Ribosomal protein S6 |Ribosomal protein S6 |Ribosomal protein S6 |Thermus thermophilus [TaxId: 274]
 d2pc6b2 :     (MSE1)   (ASP75)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Nitrosomonas europaea [TaxId: 915]
 d2f1fb1 :     (ALA1)   (GLY77)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Escherichia coli [TaxId: 562]
 d2wveb2 :    (ALA66)  (LYS140)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d3lghc_ :    (ALA66)  (SER142)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d2bj3a2 :    (GLU52)  (MET130)   [view usage] : d.58.18.4 |Ferredoxin-like |ACT-like |Nickel responsive regulator NikR, C-terminal domain |Nickel responsive regulator NikR, C-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
 d3qsib_ :    (ALA66)  (SER143)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 563041]
 d2caja2 :    (ALA66)  (LYS140)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d1vmba_ :     (LYS5)   (ARG98)   [view usage] : d.58.14.1 |Ferredoxin-like |Ribosomal protein S6 |Ribosomal protein S6 |Ribosomal protein S6 |Thermotoga maritima [TaxId: 2336]
 d2f1fa1 :     (ARG2)   (GLU75)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Escherichia coli [TaxId: 562]
 d3br8a_ :     (MET1)   (GLU76)   [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2bjda_ :    (MET12)   (PHE88)   [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
 d1cqma_ :     (TYR4)   (LYS92)   [view usage] : d.58.14.1 |Ferredoxin-like |Ribosomal protein S6 |Ribosomal protein S6 |Ribosomal protein S6 |Thermus thermophilus [TaxId: 274]
 d1psda3 :   (GLY337)  (TYR410)   [view usage] : d.58.18.1 |Ferredoxin-like |ACT-like |Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain |Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain |Escherichia coli [TaxId: 562]
 d2ca9a2 :    (ALA66)  (SER142)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d2wvda2 :    (ALA66)  (LYS140)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d2fgca2 :    (ARG28)  (PRO102)   [view usage] : d.58.18.6 |Ferredoxin-like |ACT-like |IlvH-like |Acetolactate synthase small subunit, IlvH |Thermotoga maritima [TaxId: 2336]
 d2kb2a_ :     (MET4)   (MET81)   [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 272620]
 d2bj1b2 :    (ALA55)  (SER132)   [view usage] : d.58.18.4 |Ferredoxin-like |ACT-like |Nickel responsive regulator NikR, C-terminal domain |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d2bxja1 :     (TYR4)   (LYS92)   [view usage] : d.58.14.1 |Ferredoxin-like |Ribosomal protein S6 |Ribosomal protein S6 |Ribosomal protein S6 |Thermus thermophilus [TaxId: 274]
 d3phta2 :    (ALA66)  (PHE144)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
 d2wvca2 :    (ALA66)  (SER142)   [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.58