Tableau information
Concept source: d1eara2 amino acid (a.a.) range (VAL78)(GLU133)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EHEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL78) (GLN84) E1
(THR85) (HIS100) H2
(MET102) (ASP107) E3
(ASP108) (ARG113) E4
(ASP115) (GLY126) H5
(VAL127) (GLU133) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 142.1° H2
E3 -42.2° -163.3° E3
E4 157.3° 27.4° 157.5° E4
H5 6.2° 144.7° -42.2° 154.6° H5
E6 151.4° -63.3° 109.4° -51.0° -151.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fnma4 : (VAL408) (LYS478) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus [TaxId: 274]
d4oj3a_ : (MET12) (LYS83) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1gmva2 : (SER75) (PHE127) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d2akja2 : (GLY104) (LEU171) [view usage] : d.58.36.1 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |Duplicated SiR/NiR-like domains 1 and 3 |Ferredoxin--nitrite reductase, NIR |Spinach (Spinacia oleracea) [TaxId: 3562]
d1s7hd_ : (ARG9) (GLY85) [view usage] : d.58.48.2 |Ferredoxin-like |MTH1187/YkoF-like |Putative thiamin/HMP-binding protein YkoF |Putative thiamin/HMP-binding protein YkoF |Bacillus subtilis [TaxId: 1423]
d2qifa_ : (LEU6) (ALA68) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Bacillus subtilis [TaxId: 1423]
d2rsqa_ : (CYS12) (LEU75) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ldia_ : (LYS8) (PRO76) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d1d1ra_ : (GLY45) (GLY108) [view usage] : d.64.1.1 |eIF1-like |eIF1-like |eIF1-like |YciH |Escherichia coli [TaxId: 562]
d1yk9a_ : (ALA250) (GLY350) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Mycobacterium tuberculosis
d4l3ka2 : (LYS77) (SER132) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |automated matches |Sporosarcina pasteurii [TaxId: 1474]
d1r43a2 : (ALA248) (THR358) [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Peptidase-like beta-alanine synthase |Yeast (Saccharomyces kluyveri) [TaxId: 4934]
d4lnfa2 : (ASP126) (MET232) [view usage] : d.128.1.0 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1osda_ : (ALA1) (VAL70) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Mercuric ion binding protein MerP |Ralstonia metallidurans CH34 [TaxId: 266264]
d2qifb_ : (LEU6) (ALA68) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Bacillus subtilis [TaxId: 1423]
d2atza1 : (ILE74) (PRO150) [view usage] : d.264.1.3 |Prim-pol domain |Prim-pol domain |HP0184-like |Hypothetical protein HP0184 |Helicobacter pylori [TaxId: 210]
d4fpia_ : (LEU4) (PRO83) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Rhodococcus opacus [TaxId: 37919]
d1eara2 : (VAL78) (GLU133) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Bacillus pasteurii [TaxId: 1474]
d1gmua2 : (SER75) (PHE127) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d4gvba_ : (LYS13) (SER76) [view usage] : d.58.25.1 |Ferredoxin-like |Killer toxin KP6 alpha-subunit |Killer toxin KP6 alpha-subunit |Killer toxin KP6 alpha-subunit |Ustilago maydis virus p6 [TaxId: 11010]
d3j3az3 : (VAL505) (ASP574) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor 2 (eEF-2) |Homo sapiens [TaxId: 9606]
d1eb0a2 : (VAL78) (SER132) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Bacillus pasteurii [TaxId: 1474]
d4qr0a_ : (LEU4) (LEU70) [view usage] : d.58.58.0 |Ferredoxin-like |TTP0101/SSO1404-like |automated matches |automated matches |Streptococcus pyogenes [TaxId: 301447]
d2bopa_ : (CYS327) (LEU408) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Bovine papillomavirus type 1 [TaxId: 10559]
d1q8la_ : (GLY7) (PHE75) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Menkes copper-transporting ATPase |Human (Homo sapiens) [TaxId: 9606]
d2p6tb2 : (GLY67) (PHE141) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d1r3na2 : (ALA248) (THR358) [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Peptidase-like beta-alanine synthase |Yeast (Saccharomyces kluyveri) [TaxId: 4934]
d3u5cu_ : (LYS21) (VAL117) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1gmwa2 : (SER75) (PHE127) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d4oj3b_ : (TYR17) (LYS83) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Sulfolobus solfataricus [TaxId: 2287]
d1gmvb2 : (VAL74) (PHE127) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d1gmuc2 : (SER75) (PHE127) [view usage] : d.58.38.1 |Ferredoxin-like |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Urease metallochaperone UreE, C-terminal domain |Klebsiella aerogenes [TaxId: 28451]
d3dxsx_ : (VAL6) (ILE69) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1kp6a_ : (LYS13) (SER76) [view usage] : d.58.25.1 |Ferredoxin-like |Killer toxin KP6 alpha-subunit |Killer toxin KP6 alpha-subunit |Killer toxin KP6 alpha-subunit |Smut fungus (Ustilago maydis) [TaxId: 5270]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, d.128, d.64, d.264