Tableau information
Concept source: d1afia_ amino acid (a.a.) range (VAL5)(GLN72)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EHEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL5) (PRO10) E1
(ALA16) (LYS27) H2
(SER32) (PHE38) E3
(ARG41) (THR46) E4
(SER53) (GLY65) H5
(PRO67) (GLN72) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 143.2° H2
E3 -38.0° 163.8° E3
E4 160.0° -24.1° 161.2° E4
H5 -27.4° 134.4° -55.8° 137.0° H5
E6 150.9° -62.2° 113.2° -49.1° 156.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1jwwa_ : (VAL1) (LEU70) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Potential copper-translocating P-type ATPase CopA (YvgX) |Bacillus subtilis [TaxId: 1423]
d3qn2a_ : (ALA157) (GLY225) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |automated matches |Simian virus 40 [TaxId: 10633]
d1utaa_ : (MET249) (GLY319) [view usage] : d.58.52.1 |Ferredoxin-like |Sporulation related repeat |Sporulation related repeat |Cell division protein FtsN |Escherichia coli [TaxId: 562]
d4p7tc_ : (LEU6) (ARG79) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Citrobacter freundii [TaxId: 546]
d1jk9b2 : (TYR7) (ARG71) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper chaperone for superoxide dismutase, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2rs8a_ : (SER76) (PHE145) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Non-POU domain-containing octamer-binding protein, NonO |Mouse (Mus musculus) [TaxId: 10090]
d3hx9a_ : (PRO2) (GLU91) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1kqka_ : (MET1) (LEU70) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Potential copper-translocating P-type ATPase CopA (YvgX) |Bacillus subtilis [TaxId: 1423]
d2iy5b5 : (HIS690) (ARG780) [view usage] : d.58.13.1 |Ferredoxin-like |Anticodon-binding domain of PheRS |Anticodon-binding domain of PheRS |Phenylalanyl-tRNA synthetase |Thermus thermophilus [TaxId: 274]
d4g39a1 : (MET80) (LEU145) [view usage] : d.58.36.0 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1p6ta2 : (ALA76) (LEU141) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Potential copper-translocating P-type ATPase CopA (YvgX) |Bacillus subtilis [TaxId: 1423]
d2rmla2 : (ALA76) (LEU141) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Bacillus subtilis [TaxId: 1423]
d3bpdf_ : (ARG5) (SER76) [view usage] : d.58.61.1 |Ferredoxin-like |MTH889-like |MTH889-like |Uncharacterized protein AF1549 |Archaeoglobus fulgidus [TaxId: 2234]
d2iprb_ : (ALA157) (GLY225) [view usage] : d.89.1.1 |Origin of replication-binding domain, RBD-like |Origin of replication-binding domain, RBD-like |The origin DNA-binding domain of SV40 T-antigen |The origin DNA-binding domain of SV40 T-antigen |Simian virus 40, Sv40 [TaxId: 10633]
d2hiyd_ : (ARG3) (SER78) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1cc7a_ : (LYS5) (LEU73) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |ATX1 metallochaperone protein (ATOX1) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4p2sb_ : (GLU4) (ARG79) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 702982]
d1qupa2 : (TYR7) (ILE70) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper chaperone for superoxide dismutase, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2roea_ : (LEU2) (ALA66) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d1afia_ : (VAL5) (GLN72) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Mercuric ion binding protein MerP |Shigella flexneri [TaxId: 623]
d1fvqa_ : (ARG2) (ARG70) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper transporter domain ccc2a |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1f9ha_ : (THR1) (ILE98) [view usage] : d.58.30.1 |Ferredoxin-like |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK |Escherichia coli [TaxId: 562]
d2kt2a_ : (THR2) (LEU66) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3bpdi_ : (ARG5) (SER76) [view usage] : d.58.61.1 |Ferredoxin-like |MTH889-like |MTH889-like |Uncharacterized protein AF1549 |Archaeoglobus fulgidus [TaxId: 2234]
d2k1ra_ : (GLY2) (ILE71) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2v4jb2 : (ASP60) (GLY133) [view usage] : d.58.36.2 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |DsrA/DsrB N-terminal-domain-like |Dissimilatory sulfite reductase subunit beta, DsrB |Desulfovibrio vulgaris [TaxId: 881]
d4ppda_ : (GLU4) (ARG79) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d1mwya_ : (THR4) (GLN71) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Metal ion-transporting ATPase ZntA, N-terminal domain |Escherichia coli [TaxId: 562]
d2ad9a1 : (ARG59) (PHE130) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Polypyrimidine tract-binding protein |Human (Homo sapiens) [TaxId: 9606]
d1qm9a1 : (SER4) (ASN80) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Polypyrimidine tract-binding protein |Human (Homo sapiens) [TaxId: 9606]
d9ruba2 : (VAL24) (MET123) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rhodospirillum rubrum [TaxId: 1085]
d1qupb2 : (TYR7) (ILE70) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper chaperone for superoxide dismutase, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1lxja_ : (PHE5) (ASP78) [view usage] : d.58.48.1 |Ferredoxin-like |MTH1187/YkoF-like |MTH1187-like |Hypothetical protein YB1001C |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ew9a2 : (ILE82) (LEU147) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bpdb_ : (ARG5) (SER76) [view usage] : d.58.61.1 |Ferredoxin-like |MTH889-like |MTH889-like |Uncharacterized protein AF1549 |Archaeoglobus fulgidus [TaxId: 2234]
d1cpza_ : (ALA1) (VAL67) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper chaperone |Enterococcus hirae [TaxId: 1354]
d2hiyb_ : (ALA0) (SER78) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4p2sd_ : (LEU6) (PRO78) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 702982]
d2hiyc_ : (ALA0) (SER78) [view usage] : d.356.1.1 |SP0830-like |SP0830-like |SP0830-like |Hypothetical protein SP0830 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1dhma_ : (MET1) (ILE83) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 31 [TaxId: 10585]
d4ppdf_ : (ALA5) (PRO78) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d3bpda1 : (ARG5) (SER76) [view usage] : d.58.61.1 |Ferredoxin-like |MTH889-like |MTH889-like |Uncharacterized protein AF1549 |Archaeoglobus fulgidus [TaxId: 2234]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, d.89, d.356