Tableau information
Concept source: d4ox8b_ amino acid (a.a.) range (LEU9)(ARG83)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EHEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU9) (ARG15) E1
(LEU17) (ALA30) H2
(GLU32) (GLY42) E3
(GLY44) (GLY52) E4
(THR54) (VAL71) H5
(ALA78) (ARG83) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 151.5° H2
E3 -38.8° 167.7° E3
E4 161.2° -12.0° 159.8° E4
H5 -7.6° 144.0° -46.4° 153.7° H5
E6 157.5° -50.9° 119.6° -40.2° 164.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4ppdg_ : (ALA5) (PRO78) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d1mlaa2 : (ALA131) (VAL196) [view usage] : d.58.23.1 |Ferredoxin-like |Probable ACP-binding domain of malonyl-CoA ACP transacylase |Probable ACP-binding domain of malonyl-CoA ACP transacylase |Probable ACP-binding domain of malonyl-CoA ACP transacylase |Escherichia coli [TaxId: 562]
d3mdfa_ : (ARG6) (LEU81) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bm0a4 : (VAL408) (LYS478) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus [TaxId: 274]
d1vr6a_ : (HIS-4) (LEU66) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |automated matches |Thermotoga maritima [TaxId: 2336]
d3h8ya_ : (LEU9) (ALA82) [view usage] : d.58.56.1 |Ferredoxin-like |CcmK-like |CcmK-like |automated matches |Halothiobacillus neapolitanus [TaxId: 927]
d3qsih_ : (ALA66) (SER142) [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 563041]
d1k0va_ : (GLU2) (ARG73) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper chaperone |Bacillus subtilis, CopZ [TaxId: 1423]
d2g13a1 : (LEU9) (ALA82) [view usage] : d.58.56.1 |Ferredoxin-like |CcmK-like |CcmK-like |Major carboxysome shell protein 1A, CsoS1A |Halothiobacillus neapolitanus [TaxId: 927]
d2g9oa_ : (ASP2) (ILE73) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ox8a_ : (LEU10) (ARG84) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Prochlorococcus marinus [TaxId: 74547]
d1s6oa_ : (GLY1) (LYS72) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Menkes copper-transporting ATPase |Human (Homo sapiens) [TaxId: 9606]
d1rwua_ : (PHE11) (LEU87) [view usage] : d.58.54.1 |Ferredoxin-like |YbeD/HP0495-like |YbeD-like |Hypothetical protein ybeD |Escherichia coli [TaxId: 562]
d3hjwa1 : (ALA115) (MET200) [view usage] : d.265.1.0 |Pseudouridine synthase |Pseudouridine synthase |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1vjqa_ : (LYS1) (GLU69) [view usage] : k.43.1.1 |Carboxypeptidase A prodomain-based design |Carboxypeptidase A prodomain-based design |Carboxypeptidase A prodomain-based design |Carboxypeptidase A prodomain-based design |Synthetic, sequence chosen for maximal predicted stability
d2fhma_ : (MET1) (ARG78) [view usage] : d.58.10.0 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d4ox8b_ : (LEU9) (ARG83) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Prochlorococcus marinus [TaxId: 74547]
d1n0ua4 : (VAL488) (PRO558) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor 2 (eEF-2) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3lghd_ : (ALA66) (ALA141) [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d4p7tf_ : (ALA5) (PRO78) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Citrobacter freundii [TaxId: 546]
d1tz0a_ : (MSE4) (LYS102) [view usage] : d.58.4.5 |Ferredoxin-like |Dimeric alpha+beta barrel |PG130-like |Hypothetical protein BC2969 |Bacillus cereus [TaxId: 1396]
d2bycb_ : (VAL505) (ASP580) [view usage] : d.58.10.2 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |BLUF domain |Blue light receptor BlrB |Rhodobacter sphaeroides [TaxId: 1063]
d1kn6a_ : (VAL5) (TYR76) [view usage] : d.58.3.3 |Ferredoxin-like |Protease propeptides/inhibitors |Prohormone convertase 1 pro-domain |Prohormone convertase 1 pro-domain |Mouse (Mus musculus) [TaxId: 10090]
d2wvba2 : (ALA66) (SER142) [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1yjua_ : (ASP3) (LEU71) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a10f_ : (MET1) (PRO81) [view usage] : d.58.56.1 |Ferredoxin-like |CcmK-like |CcmK-like |Carboxysome shell protein CcmK4 |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1q8ka2 : (LYS189) (VAL270) [view usage] : d.58.51.1 |Ferredoxin-like |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3p5tp_ : (ILE81) (PRO158) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3p6yk_ : (ILE81) (PRO158) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1aw0a_ : (LEU1) (ASP72) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Menkes copper-transporting ATPase |Human (Homo sapiens) [TaxId: 9606]
d2ewha1 : (LEU9) (ALA82) [view usage] : d.58.56.1 |Ferredoxin-like |CcmK-like |CcmK-like |Major carboxysome shell protein 1A, CsoS1A |Halothiobacillus neapolitanus [TaxId: 927]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.58, d.265, k.43