Tableau information
Concept source: d2dgqa_ amino acid (a.a.) range (ASP44)(PRO124)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EHEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP44) (VAL50) E1
(ASP58) (GLY70) H2
(GLY70) (ASP80) E3
(ALA90) (ALA96) E4
(ALA96) (LEU107) H5
(ILE120) (PRO124) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
H2 132.6° H2
E3 -44.8° 149.3° E3
E4 151.7° -30.3° 163.4° E4
H5 27.4° 107.6° -58.3° 134.5° H5
E6 151.3° -68.0° 106.8° -56.6° -144.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2k8ga_ : (ASN100) (ARG172) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3k5la1 : (ALA37) (GLU105) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d2leaa_ : (SER15) (MET89) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ucga_ : (ARG172) (PRO246) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2kxnb_ : (CYS118) (THR196) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4p2sh_ : (ALA5) (ALA73) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 702982]
d4p2sa_ : (GLU4) (ALA73) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 702982]
d1fjeb2 : (THR101) (TYR170) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nucleolin |Golden hamster (Mesocricetus auratus) [TaxId: 10036]
d1opza_ : (GLU4) (GLU74) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Potential copper-translocating P-type ATPase CopA (YvgX) |Bacillus subtilis [TaxId: 1423]
d2voob2 : (VAL113) (PHE184) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Lupus LA protein |Human (Homo sapiens) [TaxId: 9606]
d2ayea_ : (PRO285) (SER362) [view usage] : d.58.8.1 |Ferredoxin-like |Viral DNA-binding domain |Viral DNA-binding domain |Papillomavirus-1 E2 protein |Human papillomavirus type 6a [TaxId: 37122]
d2cqba1 : (ARG6) (LEU81) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Peptidyl-prolyl cis-trans isomerase E, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1fj7a_ : (LEU20) (LYS91) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Nucleolin |Golden hamster (Mesocricetus auratus) [TaxId: 10036]
d3hi9a_ : (THR20) (TYR95) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b4da_ : (SER173) (PRO246) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ytca_ : (THR239) (TRP309) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ppdb_ : (GLU4) (ALA73) [view usage] : d.58.56.0 |Ferredoxin-like |CcmK-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d2e5ia_ : (LEU218) (TYR290) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2dgqa_ : (ASP44) (PRO124) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, c.55