Tableau information
Concept source: d1ilva_ amino acid (a.a.) range (PRO50)(SER128)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO50) (LYS55) E1
(VAL62) (THR68) E2
(THR70) (ASP84) H3
(LEU89) (GLY93) E4
(SER107) (MSE119) H5
(PRO122) (SER128) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 149.4° E2
H3 -64.8° 131.1° H3
E4 93.5° -58.4° 145.0° E4
H5 -98.1° 109.8° -42.5° 168.3° H5
E6 74.3° -79.1° 134.6° -20.9° -169.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1w36b2 : (ALA498) (SER582) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Exodeoxyribonuclease V beta chain (RecB), N-terminal domain |Escherichia coli [TaxId: 562]
d1hvua2 : (GLN336) (ASN418) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1vmia_ : (LYS145) (GLU237) [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Ethanolamine utilization protein EutD |Escherichia coli [TaxId: 562]
d1kyqb1 : (LYS71) (ALA140) [view usage] : c.2.1.11 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Siroheme synthase N-terminal domain-like |Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2dt8a_ : (LEU184) (GLU259) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3i4ea_ : (GLY252) (CYS315) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d3lupa_ : (ILE186) (GLY263) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Streptococcus agalactiae [TaxId: 208435]
d2ajra_ : (GLU89) (GLU170) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Putative sugar kinase TM0828 |Thermotoga maritima [TaxId: 2336]
d3ju8a_ : (GLU376) (ASN432) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1ai9a_ : (ASN83) (PRO138) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Yeast (Candida albicans) [TaxId: 5476]
d2wqka_ : (GLU50) (ALA127) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d3csea_ : (GLU84) (PRO144) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 5478]
d4hwtb1 : (GLY471) (SER567) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3smpa1 : (THR286) (ASP362) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |Pantothenate kinase 1, PANK1 |Human (Homo sapiens) [TaxId: 9606]
d4h98a_ : (GLU84) (PRO144) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Candida glabrata [TaxId: 284593]
d1ilva_ : (PRO50) (SER128) [view usage] : c.106.1.1 |SurE-like |SurE-like |SurE-like |SurE homolog TM1662 |Thermotoga maritima [TaxId: 2336]
d2fg1a_ : (GLY63) (LEU155) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d3ty2a_ : (ALA60) (LEU135) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d4m9cd_ : (GLY42) (SER95) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d4h95a_ : (ASN83) (PRO138) [view usage] : c.71.1.1 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |Dihydrofolate reductases |Dihydrofolate reductases, eukaryotic type |Yeast (Candida albicans) [TaxId: 5476]
d1riqa2 : (LYS66) (GLY155) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Alanyl-tRNA synthetase (AlaRS) |Aquifex aeolicus [TaxId: 63363]
d1tq6a_ : (GLU110) (ARG182) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Interferon-inducible GTPase |Mouse (Mus musculus) [TaxId: 10090]
d3ju8b_ : (GLU376) (ASN432) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3mr7b_ : (ASP101) (GLY151) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
d2rd5b_ : (PRO90) (PRO146) [view usage] : c.73.1.0 |Carbamate kinase-like |Carbamate kinase-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2v4od_ : (SER50) (ASN126) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Salmonella typhimurium [TaxId: 99287]
d2e6ca_ : (HIS49) (VAL129) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2qe7d2 : (LEU138) (GLY209) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |automated matches |Bacillus sp. [TaxId: 90973]
d1zmra_ : (ASP97) (ALA163) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Escherichia coli [TaxId: 562]
d1pzxb_ : (ASN187) (ASP262) [view usage] : c.119.1.1 |DAK1/DegV-like |DAK1/DegV-like |DegV-like |Hypothetical protein apc36103 |Bacillus stearothermophilus [TaxId: 1422]
d3mr7a_ : (ASP101) (GLY151) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, b.81, c.2, d.58, c.82, c.77, c.72, c.37, d.104, c.55, c.86, c.71, c.73, c.50, c.119, c.106