Tableau information
Concept source: d2mi8a_ amino acid (a.a.) range (MET1)(LEU71)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MET1) (THR7) E1
(ARG11) (GLU16) E2
(ILE23) (GLY35) H3
(GLN41) (ALA46) E4
(THR55) (ASN60) H5
(SER65) (LEU71) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 158.4° E2
H3 -57.5° 128.0° H3
E4 114.6° -81.4° 121.6° E4
H5 84.8° -110.3° -105.8° -29.8° H5
E6 -29.7° 129.3° -64.6° 139.2° 110.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2kfka_ : (LYS4) (ASP77) [view usage] : d.15.2.2 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |PB1 domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2o6vd1 : (MET301) (LEU371) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Human (Homo sapiens) [TaxId: 9606]
d3i63c_ : (ALA3) (PHE82) [view usage] : d.15.12.0 |beta-Grasp (ubiquitin-like) |TmoB-like |automated matches |automated matches |Pseudomonas mendocina [TaxId: 300]
d2klca_ : (MET26) (THR97) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4maca_ : (ARG46) (LEU111) [view usage] : d.15.2.0 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2eela_ : (GLY7) (GLU78) [view usage] : d.15.2.0 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hk2a_ : (GLY-1) (ARG71) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gbjb_ : (MET1) (GLY84) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ud7a_ : (MET1) (LEU71) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Human (Homo sapiens) [TaxId: 9606]
d1wz0a1 : (ILE25) (GLN97) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |SUMO-2 |Human (Homo sapiens) [TaxId: 9606]
d2bkrb_ : (MET1) (LEU71) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2lrwa_ : (LEU3) (VAL72) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Trypanosoma brucei [TaxId: 999953]
d3dbli_ : (MET101) (LEU169) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Nedd8 |Human (Homo sapiens) [TaxId: 9606]
d1v49a_ : (PRO32) (SER115) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |Microtubule-associated proteins 1A/1B light chain 3B |Human (Homo sapiens) [TaxId: 9606]
d1rrba_ : (ASN56) (PHE130) [view usage] : d.15.1.5 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ras-binding domain, RBD |c-Raf1 RBD |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2jxxa_ : (GLN24) (GLY97) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nddb_ : (MET101) (LEU171) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Nedd8 |Human (Homo sapiens) [TaxId: 9606]
d1f2ri_ : (PRO20) (CYS90) [view usage] : d.15.2.1 |beta-Grasp (ubiquitin-like) |CAD & PB1 domains |CAD domain |Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2mi8a_ : (MET1) (LEU71) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Human (Homo sapiens) [TaxId: 9606]
d1v5oa_ : (SER6) (ASP85) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |1700011n24rik protein |Mouse (Mus musculus) [TaxId: 10090]
d1j0ga_ : (MET8) (PRO85) [view usage] : d.15.1.6 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |BM-002-like |Hypothetical protein 1810045k17 |Mouse (Mus musculus) [TaxId: 10090]
d4piga_ : (MET1) (GLY75) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wxva1 : (VAL10) (GLY83) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Bag-family molecular chaperone regulator-1 |Human (Homo sapiens) [TaxId: 9606]
d3qx1b_ : (PRO572) (ALA648) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cr5a1 : (GLU22) (VAL95) [view usage] : d.15.1.2 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |UBX domain |UBX domain-containing protein 6 (Reproduction 8) |Mouse (Mus musculus) [TaxId: 10090]
d3a4ra_ : (GLN339) (GLY412) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2gbja_ : (MET1) (LEU79) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2kwca_ : (ASN27) (GLY111) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3q2ac_ : (ALA3) (PHE83) [view usage] : d.15.12.0 |beta-Grasp (ubiquitin-like) |TmoB-like |automated matches |automated matches |Pseudomonas mendocina [TaxId: 300]
d2mrea_ : (GLY-2) (LEU73) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin |Human (Homo sapiens) [TaxId: 9606]
d1we6a_ : (ALA28) (LEU102) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Splicing factor 3 subunit 1, C-terminal domain |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.15